Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIT38_RS19980 Genome accession   NZ_CP085394
Coordinates   3980120..3981808 (-) Length   562 a.a.
NCBI ID   WP_243504827.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3975120..3986808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS19960 (LIT38_19990) - 3976955..3977191 (+) 237 WP_252215583.1 DUF2627 domain-containing protein -
  LIT38_RS19965 (LIT38_19995) - 3977209..3977349 (+) 141 WP_243504822.1 YycC family protein -
  LIT38_RS19970 (LIT38_20000) spo0A 3977481..3978269 (-) 789 WP_243504823.1 sporulation transcription factor Spo0A Regulator
  LIT38_RS19975 (LIT38_20005) spoIVB 3978654..3979943 (-) 1290 WP_243504826.1 SpoIVB peptidase -
  LIT38_RS19980 (LIT38_20010) recN 3980120..3981808 (-) 1689 WP_243504827.1 DNA repair protein RecN Machinery gene
  LIT38_RS19985 (LIT38_20015) argR 3981996..3982445 (-) 450 WP_009332889.1 transcriptional regulator ArgR -
  LIT38_RS19990 (LIT38_20020) - 3982622..3983467 (-) 846 WP_243504829.1 TlyA family RNA methyltransferase -
  LIT38_RS19995 (LIT38_20025) dxs 3983471..3985363 (-) 1893 WP_243504831.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIT38_RS20000 (LIT38_20030) - 3985734..3986624 (-) 891 WP_243504832.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63512.59 Da        Isoelectric Point: 5.2886

>NTDB_id=617519 LIT38_RS19980 WP_243504827.1 3980120..3981808(-) (recN) [Bacillus sp. CMF12]
MLNEISIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAEIEGLFILDDPKHPCYKR
SAEFGIEIEDGMIVLRRDISKTGKSVCRVNGKLVTISVLREIGSSLIDIHGQHEHQELMDETFHLPLLDQFGGSKISAAL
TEYHDIYRLYESTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLNEDEDLIEEKSRLSNYERIFDSLQSGYNALQG
EHKGLDWIGMVMGYMNDAAELDSAYKEIAENVANSFYLLEDAARSLRNEMDFMEYDPQRLNEIESRLNEINGLKRKYGKT
VEEVLEYAAKIEEEIETLQNKETHIDKLQKEVAALKKDLLVEGEELSKLRRKSALKLTKLIHKELKELYMEKTVFEVRFF
SDPEVFLKNGIDRAEFYLSTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSVDSQVLCISHLPQVAAMADTHLFIAKNTKDGRTKTTVKPLTEDEKIKEIGRMISGVEITDLTKEHAKELLHLANQLK
LF

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=617519 LIT38_RS19980 WP_243504827.1 3980120..3981808(-) (recN) [Bacillus sp. CMF12]
TTGTTAAACGAAATATCCATACGAAATTTTGCCATAATCGAAGCCCTTTCTGTCTCATTTGAAAAGGGCTTAACTGTTTT
AACTGGTGAAACCGGAGCAGGGAAGTCCATCATTATCGATGCCATTCACTTGCTGGCTGGAGGCAGGGGATCTGCAGAAT
TTGTCCGCCATGGTGAAGATAAGGCTGAAATTGAGGGGCTTTTTATCCTGGATGATCCTAAACATCCTTGCTATAAAAGG
TCTGCTGAATTTGGGATAGAGATTGAAGATGGAATGATTGTTCTCCGCAGGGATATATCAAAGACAGGAAAAAGCGTCTG
CAGAGTGAACGGAAAACTTGTCACTATTTCTGTATTGAGAGAAATCGGAAGTTCGCTTATTGATATACACGGTCAGCATG
AACATCAGGAATTAATGGATGAAACCTTTCATCTTCCTCTCCTCGATCAGTTTGGAGGATCCAAAATATCCGCTGCCTTA
ACTGAATACCACGATATCTATAGGTTATATGAAAGTACTCTGAAAAAGCTTAAGAATTTAAGTGAGAATGAACAGCAAAT
GGCGCATCGGCTTGATCTAATTCAATTTCAGCTGGATGAAATTCAGTCGGCTCAGCTGAAATTGAACGAAGATGAAGATT
TGATTGAAGAAAAGAGCAGGCTTTCCAATTATGAACGTATTTTTGATTCTCTACAGTCAGGCTATAATGCCCTTCAAGGA
GAACATAAAGGGCTTGATTGGATCGGAATGGTTATGGGCTATATGAATGATGCCGCTGAACTGGACTCTGCCTATAAAGA
AATAGCGGAAAATGTGGCAAACAGTTTTTATTTGCTTGAAGATGCAGCCCGATCACTCCGCAATGAAATGGACTTTATGG
AATATGATCCCCAAAGGCTTAATGAGATAGAAAGCAGATTGAATGAAATTAATGGGCTAAAGAGAAAATATGGAAAAACG
GTTGAAGAAGTGCTGGAATACGCTGCAAAAATAGAAGAAGAAATTGAAACCCTGCAAAATAAAGAAACTCATATTGATAA
GCTGCAAAAGGAAGTTGCTGCACTGAAAAAAGACCTTCTGGTTGAAGGAGAAGAATTGAGCAAGCTGCGCAGAAAATCTG
CTCTTAAGCTTACCAAGTTAATTCATAAAGAGCTTAAGGAACTATATATGGAAAAGACAGTTTTTGAGGTCAGATTCTTT
TCTGATCCCGAAGTCTTCCTAAAGAACGGAATTGACAGGGCGGAGTTCTACCTTTCCACCAATCCGGGAGAACCGCTCAA
GCCGCTGTCTAAAATTGCATCAGGCGGGGAATTGTCCCGAATCATGCTTGCTTTAAAGAGCATATTTTCAAAACATCAGG
GTGTCACAAGTATAATTTTCGATGAGGTAGACACAGGCGTGAGCGGCAGGGTTGCGCAAGCCATCGCGGAAAAGATTCAT
CACGTTTCCGTGGATTCACAGGTGCTGTGCATCTCTCATCTTCCGCAGGTTGCGGCCATGGCAGATACTCATTTATTCAT
TGCTAAAAACACAAAGGATGGGCGGACAAAAACAACAGTAAAACCGCTGACTGAGGATGAGAAAATCAAAGAAATCGGCC
GTATGATTTCCGGAGTGGAAATTACTGATTTGACAAAAGAGCATGCGAAAGAGCTGCTGCATCTGGCTAATCAGCTAAAG
TTATTTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(5-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.195

100

0.635