Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LIT38_RS19970 Genome accession   NZ_CP085394
Coordinates   3977481..3978269 (-) Length   262 a.a.
NCBI ID   WP_243504823.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3972481..3983269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS19950 (LIT38_19980) yqiS 3973620..3974522 (-) 903 WP_243504817.1 phosphate butyryltransferase -
  LIT38_RS19955 (LIT38_19985) - 3974734..3976800 (-) 2067 WP_252215579.1 sigma 54-interacting transcriptional regulator -
  LIT38_RS19960 (LIT38_19990) - 3976955..3977191 (+) 237 WP_252215583.1 DUF2627 domain-containing protein -
  LIT38_RS19965 (LIT38_19995) - 3977209..3977349 (+) 141 WP_243504822.1 YycC family protein -
  LIT38_RS19970 (LIT38_20000) spo0A 3977481..3978269 (-) 789 WP_243504823.1 sporulation transcription factor Spo0A Regulator
  LIT38_RS19975 (LIT38_20005) spoIVB 3978654..3979943 (-) 1290 WP_243504826.1 SpoIVB peptidase -
  LIT38_RS19980 (LIT38_20010) recN 3980120..3981808 (-) 1689 WP_243504827.1 DNA repair protein RecN Machinery gene
  LIT38_RS19985 (LIT38_20015) argR 3981996..3982445 (-) 450 WP_009332889.1 transcriptional regulator ArgR -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29145.66 Da        Isoelectric Point: 6.3887

>NTDB_id=617518 LIT38_RS19970 WP_243504823.1 3977481..3978269(-) (spo0A) [Bacillus sp. CMF12]
MKKIKVCVVDDNRELVGLLEEYISSQEDMEVAGVAHNGQDCLEILEQTQPDVLVLDIIMPHLDGLAVLEKMRDLNLNSLP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMDNLASHIRQVSGKSNSFLRKPAPSYRTQAEAKPKNLDASITSIIHEIG
VPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMTKA
KPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 789 bp        

>NTDB_id=617518 LIT38_RS19970 WP_243504823.1 3977481..3978269(-) (spo0A) [Bacillus sp. CMF12]
GTGAAGAAAATAAAAGTTTGTGTTGTGGATGATAATAGGGAACTGGTCGGGCTTTTAGAGGAATATATATCTTCCCAGGA
AGACATGGAAGTTGCCGGTGTTGCTCATAATGGACAGGATTGCCTCGAAATATTAGAGCAGACACAGCCCGACGTTCTTG
TATTGGATATCATCATGCCTCACTTGGATGGACTTGCTGTACTCGAAAAAATGAGAGATTTAAATTTGAATTCACTCCCT
AATGTCATCATGCTTACTGCATTCGGACAGGAAGATGTCACCAAAAAGGCAGTGGATTTGGGAGCTTCTTACTTTATCCT
TAAACCATTTGACATGGACAATTTGGCAAGCCATATACGTCAGGTCAGCGGAAAATCAAATTCATTTCTCCGCAAGCCCG
CTCCATCTTACCGTACTCAGGCAGAAGCAAAGCCTAAGAACCTGGATGCCAGCATCACCAGCATCATCCATGAAATTGGC
GTTCCTGCCCATATTAAAGGATACTTATATCTCCGTGAAGCAATTTCAATGGTGTACAATGATATAGAACTTCTCGGTTC
CATTACAAAAGTGCTGTACCCCGATATAGCTAAGAAGTTTAATACTACGGCAAGCCGTGTGGAGCGTGCAATCCGCCATG
CGATTGAAGTTGCGTGGAGCCGCGGTAATATTGATTCCATTTCCTCTCTTTTCGGATATACAGTCAGCATGACAAAAGCA
AAGCCAACCAACTCGGAATTTATTGCAATGGTTGCAGATAAGCTGCGTCTGGAGCACAAAGCTTCTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(152-255)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.84