Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LIT38_RS07525 Genome accession   NZ_CP085394
Coordinates   1447612..1449429 (+) Length   605 a.a.
NCBI ID   WP_243508107.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1442612..1454429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS07500 (LIT38_07515) - 1443145..1443333 (-) 189 WP_159868752.1 hypothetical protein -
  LIT38_RS07505 (LIT38_07520) - 1443580..1444155 (+) 576 WP_243508104.1 GNAT family N-acetyltransferase -
  LIT38_RS07510 (LIT38_07525) spxA 1444630..1445025 (+) 396 WP_009331204.1 transcriptional regulator SpxA -
  LIT38_RS07515 (LIT38_07530) mecA 1445437..1446099 (+) 663 WP_252217481.1 adaptor protein MecA Regulator
  LIT38_RS07520 (LIT38_07535) - 1446300..1447493 (+) 1194 WP_252217483.1 competence protein CoiA family protein -
  LIT38_RS07525 (LIT38_07540) pepF 1447612..1449429 (+) 1818 WP_243508107.1 oligoendopeptidase F Regulator
  LIT38_RS07530 (LIT38_07545) - 1450131..1451006 (-) 876 WP_252217484.1 ClpXP adapter SpxH family protein -
  LIT38_RS07535 (LIT38_07550) - 1451003..1451407 (-) 405 WP_243508109.1 globin -
  LIT38_RS07540 (LIT38_07555) - 1451659..1452300 (-) 642 WP_243508110.1 lytic transglycosylase domain-containing protein -
  LIT38_RS07545 (LIT38_07560) - 1452333..1452923 (-) 591 WP_243508111.1 CYTH domain-containing protein -
  LIT38_RS07550 (LIT38_07565) - 1453150..1453515 (+) 366 WP_221877427.1 hypothetical protein -
  LIT38_RS07555 (LIT38_07570) - 1453636..1454274 (+) 639 WP_275723073.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69976.29 Da        Isoelectric Point: 4.8399

>NTDB_id=617507 LIT38_RS07525 WP_243508107.1 1447612..1449429(+) (pepF) [Bacillus sp. CMF12]
MANETTVKKLPARNEISQEDTWRLEDIFPSDEEWDKEYNEVQKLIPNAGKYQGRLGESAETLYEALQFQDHLLSHLGKLY
TYAHMRYDQDTTNSFYQGQDDKIKNLYSEAASALAYIVPELLAEDEEKIAGFLEEKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRFIRFLESDEQRVRHDAFKAVYETYGKFRNTFAST
LSGNVKKDNFNAKIRNYESARHAALAANNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVEELHMYDLYTPLVKEVKM
EIPYNEAKDLILKGLKPLGEDYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTKEYYELNKKYFGEEAIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTNSKPIEDACKVFEEKLNEMESLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=617507 LIT38_RS07525 WP_243508107.1 1447612..1449429(+) (pepF) [Bacillus sp. CMF12]
ATGGCTAATGAGACAACTGTAAAGAAACTTCCAGCAAGGAATGAGATTTCACAAGAAGATACCTGGCGTTTGGAGGATAT
TTTCCCTTCTGATGAGGAATGGGACAAGGAATATAATGAAGTGCAGAAGCTAATCCCTAATGCAGGCAAGTATCAAGGCA
GGCTTGGAGAAAGTGCTGAAACATTATATGAAGCGCTGCAGTTCCAGGATCATTTACTCTCGCACCTTGGGAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGATACAACAAACTCATTTTATCAGGGCCAGGACGACAAAATTAAAAATTTATA
TTCAGAAGCTGCAAGTGCACTCGCGTATATCGTTCCTGAATTGCTGGCTGAAGATGAAGAGAAGATTGCCGGGTTTTTAG
AGGAAAAAACTGAGCTGCAATTATATAAACATTCTCTTGAGGAAATTAATCTTCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTGCTTGCCCAGGCTTCCGAGGTGCTTGGGGCTTCGAGCAATACATTTGGCATGCTGAATAATGCTGATTT
GGAGTTTCCATCCATTAAAGATGAAAATGGTGAAGAGGTCGAAATTACTCATGGAAGATTCATCCGTTTTCTCGAAAGTG
ATGAGCAGCGTGTCCGCCATGATGCTTTCAAAGCGGTATATGAGACTTATGGAAAGTTCCGCAATACATTCGCAAGCACT
CTAAGCGGAAATGTTAAAAAGGATAATTTCAATGCAAAAATCCGGAATTATGAATCTGCGCGACATGCTGCCCTTGCTGC
GAACAATATTCCCGAAAGTGTTTATGAAAATTTAGTCAATACCATTAACGATAATCTGCATTTGCTGCATCGATATGTCA
AACTCCGCAAGAAGGTTCTGGGGGTTGAGGAGCTTCATATGTATGATCTTTATACTCCATTAGTGAAGGAAGTGAAAATG
GAAATCCCGTACAATGAAGCAAAAGATCTCATCTTAAAAGGGCTGAAGCCGCTTGGCGAGGACTATTTGAATATTTTAAA
AGAGGGCTTTGAAAATCGCTGGGTAGATGTTCATGAGAACAAGGGCAAAAGAAGCGGTGCCTATTCATCTGGAACATATG
GCACTAATCCATATATACTGATGAACTGGCAGGACAATGTGAACAACCTATTTACCCTTGCCCACGAATTTGGGCATTCT
GTTCACAGCTATTACACAAGAAAATATCAGCCATATCCATATGGAAACTATTCTATTTTTGTCGCAGAAGTTGCATCTAC
TTGTAATGAAGCCCTCTTAAATGATTATCTGCTTAAAACAATAGATGATGATAAGAAGCGTTTGTATTTGCTGAATCATT
ATCTTGAAGGCTTTAGGGGAACTGTTTTCCGCCAGACAATGTTTGCAGAGTTTGAACATCTCATCCATCAAAAGGCGCAA
AACAATGAAGCTTTGACTGCTGATTCATTGACGAAAGAATATTATGAACTCAATAAGAAATATTTTGGGGAAGAAGCCAT
CGTGATAGATGAGGAAATCGGCCTGGAATGGTCCAGAATCCCGCATTTCTACTATAATTATTATGTTTATCAATATGCAA
CAGGCTTCAGTGCGGCAACTGCATTAAGCAAGCAAATTCTTCAGGAAGGCCAGCCTGCTGTTGACAGATACATTGAATTC
CTGAAATCCGGCAGCTCAGATTATCCAATTGAGGTGTTAAAGAAAGCCGGTGTTGATATGACGAACAGCAAGCCGATTGA
AGATGCCTGCAAAGTATTTGAAGAAAAACTTAATGAAATGGAGAGCTTGCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.169

97.851

0.491