Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LIT38_RS00575 Genome accession   NZ_CP085394
Coordinates   112339..113718 (+) Length   459 a.a.
NCBI ID   WP_221876809.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 107339..118718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS00555 (LIT38_00555) - 107372..107833 (+) 462 WP_009336509.1 CtsR family transcriptional regulator -
  LIT38_RS00560 (LIT38_00560) - 107857..108405 (+) 549 WP_252216705.1 UvrB/UvrC motif-containing protein -
  LIT38_RS00565 (LIT38_00565) - 108408..109487 (+) 1080 WP_243506470.1 protein arginine kinase -
  LIT38_RS00570 (LIT38_00570) clpC 109492..111942 (+) 2451 WP_243506471.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  LIT38_RS00575 (LIT38_00575) radA 112339..113718 (+) 1380 WP_221876809.1 DNA repair protein RadA Machinery gene
  LIT38_RS00580 (LIT38_00580) disA 113721..114794 (+) 1074 WP_243506472.1 DNA integrity scanning diadenylate cyclase DisA -
  LIT38_RS00585 (LIT38_00585) - 115024..116112 (+) 1089 WP_243506473.1 PIN/TRAM domain-containing protein -
  LIT38_RS00590 (LIT38_00590) ispD 116356..117042 (+) 687 WP_243506474.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LIT38_RS00595 (LIT38_00595) ispF 117056..117541 (+) 486 WP_243506475.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49522.92 Da        Isoelectric Point: 7.1763

>NTDB_id=617489 LIT38_RS00575 WP_221876809.1 112339..113718(+) (radA) [Bacillus sp. CMF12]
MAKRKTKFMCQECGYESPKWMGKCPGCGQWNTMVEEVEKPASTRRGAFAHSQGSAIAAKATPITSIETVSEPRIHTDLIE
LNRVLGGGIVRGSLVLIGGDPGIGKSTLLLQVSSQLANRKHSVLYISGEESMRQTKLRADRLGVSSDSLLVYSETSLDEI
SRTIDSVNPDFVIIDSIQTIFHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVANPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTKATDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERVILPANNLGGWSAPGGIELIGVSSVGEALKAALGG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=617489 LIT38_RS00575 WP_221876809.1 112339..113718(+) (radA) [Bacillus sp. CMF12]
ATGGCTAAAAGAAAAACGAAATTCATGTGCCAGGAATGCGGCTATGAATCACCTAAATGGATGGGAAAATGTCCGGGGTG
CGGACAATGGAATACGATGGTGGAAGAGGTGGAGAAGCCTGCTTCAACGAGAAGAGGCGCTTTTGCTCATTCACAGGGTT
CGGCCATAGCGGCGAAAGCCACACCGATTACATCCATTGAAACAGTCAGCGAACCCCGCATACATACTGATTTAATAGAA
TTAAACCGTGTCCTTGGGGGCGGAATTGTAAGAGGCTCCCTTGTTCTTATTGGAGGAGATCCGGGCATCGGGAAATCAAC
GCTTCTTCTTCAAGTGTCATCACAGCTGGCGAACAGGAAGCATTCTGTTCTCTATATATCAGGGGAAGAATCCATGCGCC
AGACGAAGCTGAGGGCTGACCGTTTAGGTGTTTCTTCAGACAGTCTGCTCGTTTATTCGGAAACCAGCCTTGATGAAATC
AGCAGAACGATTGATTCAGTGAATCCTGACTTTGTCATTATTGACTCCATTCAGACGATCTTTCACCCGGAAGTGACATC
GGCGCCGGGCAGCGTTTCTCAGGTTCGGGAATGTACTGCTGAGCTAATGCGCATCGGCAAAACGAAGGGAATTGCCATTT
TTATCGTAGGGCATGTTACAAAGGAAGGCTCCATTGCGGGTCCAAGACTGCTCGAGCATATGGTAGATACCGTTTTGTAT
TTTGAAGGTGAACGCCATCATACATACAGGATTTTGCGTGCGGTTAAAAACAGGTTCGGATCAACAAACGAAATGGGCAT
TTTTGAAATGAAGGAATTTGGGCTTGAGGAAGTGGCAAACCCGTCAGAAATTTTCCTGGAAGAGCGGTCACAGGGAGCTG
CGGGTTCAACAGTCGTGGCATCCATGGAAGGAACAAGGCCAGTTCTGGTTGAAATTCAGGCGCTGATTTCCCCGACAAGC
TTTGGAAATCCAAGACGAATGGCGACAGGAATTGATCATAACCGGGTTCCGCTCCTGATGGCGGTATTGGAAAAACGGGT
CGGGATGCTCCTGCAAAATCAAGATGCCTACCTAAAAGTCGCTGGCGGAGTGAAGCTTGATGAACCGGCAATTGATTTGG
CCATTGCTGTGAGCATTGCGTCAAGCTTTCGGGATAAGCCAACAAAGGCAACAGACTGCATCATCGGAGAAGTAGGACTC
ACAGGCGAGGTCAGGAGAGTATCAAGAATAGAACAAAGAGTGCAGGAGGCAGCCAAGCTGGGCTTTGAGCGTGTTATCCT
GCCGGCTAACAATCTTGGCGGCTGGAGCGCACCGGGAGGAATTGAACTAATCGGAGTAAGCTCGGTCGGTGAAGCATTAA
AGGCTGCGTTAGGGGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.391

100

0.776
  radA Streptococcus mitis NCTC 12261

60.349

100

0.603
  radA Streptococcus pneumoniae Rx1

60.349

100

0.603
  radA Streptococcus pneumoniae D39

60.349

100

0.603
  radA Streptococcus pneumoniae R6

60.349

100

0.603
  radA Streptococcus pneumoniae TIGR4

60.349

100

0.603
  radA Streptococcus mitis SK321

60.349

100

0.603