Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | LIT38_RS00570 | Genome accession | NZ_CP085394 |
| Coordinates | 109492..111942 (+) | Length | 816 a.a. |
| NCBI ID | WP_243506471.1 | Uniprot ID | - |
| Organism | Bacillus sp. CMF12 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 104492..116942
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIT38_RS00555 (LIT38_00555) | - | 107372..107833 (+) | 462 | WP_009336509.1 | CtsR family transcriptional regulator | - |
| LIT38_RS00560 (LIT38_00560) | - | 107857..108405 (+) | 549 | WP_252216705.1 | UvrB/UvrC motif-containing protein | - |
| LIT38_RS00565 (LIT38_00565) | - | 108408..109487 (+) | 1080 | WP_243506470.1 | protein arginine kinase | - |
| LIT38_RS00570 (LIT38_00570) | clpC | 109492..111942 (+) | 2451 | WP_243506471.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| LIT38_RS00575 (LIT38_00575) | radA | 112339..113718 (+) | 1380 | WP_221876809.1 | DNA repair protein RadA | Machinery gene |
| LIT38_RS00580 (LIT38_00580) | disA | 113721..114794 (+) | 1074 | WP_243506472.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| LIT38_RS00585 (LIT38_00585) | - | 115024..116112 (+) | 1089 | WP_243506473.1 | PIN/TRAM domain-containing protein | - |
Sequence
Protein
Download Length: 816 a.a. Molecular weight: 90562.25 Da Isoelectric Point: 5.9775
>NTDB_id=617488 LIT38_RS00570 WP_243506471.1 109492..111942(+) (clpC) [Bacillus sp. CMF12]
MMFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREGEGIAAKALYALGLGSDKIQKEVENLIGRGQDASQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESGSHQGGSAANANT
PTLDGLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPETLRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPITVDEPTAEESVQILEGLRDRYEAHHRVTITDAAIQAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSYTTPPNLKELEVKLEDVRKEKDAAVQSQEFEKAASLRDTEQRLREQLEETKKTWKEKQGKENSEVTVEDIANVV
ASWTGIPVSKLAQTETEKLLNLEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTELARALAE
AMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTVLIMTSNVGAEALKRNKYVGFNIQDGEQDYKDMKGKVMEEMKKSFRPEFLNRIDEIIVFHALEKKHLQ
EIVTLMSDTLTKRLKEQDITLELTDAAKEKISVEGYDPEYGARPLRRAIQKHIEDRLSEELLKGTVLTGQSVVIDVKDGE
FVVKTAEPSGAPNLQK
MMFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREGEGIAAKALYALGLGSDKIQKEVENLIGRGQDASQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESGSHQGGSAANANT
PTLDGLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPETLRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPITVDEPTAEESVQILEGLRDRYEAHHRVTITDAAIQAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSYTTPPNLKELEVKLEDVRKEKDAAVQSQEFEKAASLRDTEQRLREQLEETKKTWKEKQGKENSEVTVEDIANVV
ASWTGIPVSKLAQTETEKLLNLEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTELARALAE
AMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTVLIMTSNVGAEALKRNKYVGFNIQDGEQDYKDMKGKVMEEMKKSFRPEFLNRIDEIIVFHALEKKHLQ
EIVTLMSDTLTKRLKEQDITLELTDAAKEKISVEGYDPEYGARPLRRAIQKHIEDRLSEELLKGTVLTGQSVVIDVKDGE
FVVKTAEPSGAPNLQK
Nucleotide
Download Length: 2451 bp
>NTDB_id=617488 LIT38_RS00570 WP_243506471.1 109492..111942(+) (clpC) [Bacillus sp. CMF12]
ATGATGTTCGGACGATTTACGGAAAGAGCTCAAAAAGTATTGGCTTTAGCACAGGAGGAAGCAATCCGTTTAGGACATAA
CAACATCGGGACAGAGCATATTCTGCTGGGACTTGTACGCGAAGGTGAAGGCATTGCAGCAAAAGCTCTCTATGCTTTAG
GCCTCGGCTCTGATAAGATCCAAAAAGAGGTTGAGAATTTAATAGGCAGGGGGCAGGATGCTTCCCAGACCATTCATTAT
ACACCACGTGCCAAGAAAGTCATTGAACTTTCCATGGACGAAGCAAGAAAGCTTGGCCATTCCTATGTAGGAACAGAGCA
TATCCTGCTTGGCCTGATCCGTGAGGGTGAAGGAGTTGCAGCGAGAGTCCTGAATAATCTTGGAGTCAGCCTCAATAAAG
CTCGCCAGCAAGTGCTTCAGCTATTAGGAAGCAATGAGTCCGGCAGTCATCAGGGTGGCTCCGCAGCCAATGCGAACACA
CCGACACTGGATGGATTGGCACGTGACTTGACTGCTATTGCCAGAGAAGGAAGCTTGGATCCGGTTATTGGACGAAGCAA
AGAAATTCAGCGTGTAATCGAAGTATTAAGCCGCAGGACGAAAAATAACCCAGTTCTTATCGGTGAGCCTGGGGTAGGTA
AAACAGCCATCGCAGAGGGCTTGGCACAGCAGATCATTAATAATGAAGTGCCTGAGACTCTTCGTGATAAAAGGGTTATG
ACGCTTGATATGGGTACAGTAGTTGCCGGAACAAAGTATCGCGGTGAATTTGAAGACCGCTTGAAGAAGGTAATGGATGA
AATCAGGCAGGCCGGAAACATCATTTTATTTATTGACGAGCTTCATACATTAATAGGTGCAGGCGGAGCAGAAGGTGCGA
TCGATGCTTCCAACATCTTAAAGCCTTCTCTGGCCCGCGGTGAACTTCAGTGTATTGGTGCAACAACTCTTGATGAGTAC
AGAAAATACATTGAAAAGGATGCGGCACTTGAAAGAAGATTCCAGCCTATTACGGTTGATGAGCCGACTGCGGAAGAATC
GGTACAGATTCTTGAAGGTCTTCGTGACCGTTATGAGGCACACCATCGCGTGACGATTACGGATGCAGCCATTCAAGCCG
CTGTAAAACTATCAGACCGCTACATCTCAGACCGCTTCCTTCCGGATAAAGCGATTGATTTAATTGACGAAGCGGGTTCA
AAGGTAAGACTTCGCTCTTACACTACACCTCCAAACCTGAAAGAACTGGAGGTTAAGCTGGAGGATGTAAGGAAAGAAAA
AGACGCTGCCGTTCAAAGCCAGGAGTTTGAAAAGGCGGCTTCCTTAAGAGATACAGAGCAGCGCCTGCGCGAACAGCTTG
AAGAAACGAAGAAGACATGGAAAGAAAAGCAGGGCAAAGAGAACAGTGAAGTGACGGTTGAGGATATCGCCAATGTGGTG
GCCAGCTGGACTGGAATCCCTGTATCGAAGCTGGCCCAAACAGAAACAGAAAAGCTTCTGAACCTGGAAGAAATTCTTCA
TTCCCGTGTAATCGGACAGGAAGAAGCGGTTAAAGCCATTTCGAAGGCTGTCCGCCGTGCCCGTGCAGGCCTTAAAGATC
CGAAGCGCCCTATTGGCTCATTTGTATTCCTTGGGCCGACTGGGGTAGGTAAAACAGAGTTAGCCCGTGCATTAGCAGAA
GCGATGTTCGGTGACGAGGATGCGATGATCCGCATCGATATGTCAGAATACATGGAGAAGCACTCCACATCCCGTCTGGT
AGGTTCGCCTCCGGGTTATGTAGGATATGAAGAAGGCGGGCAGTTAACCGAAAAGGTCCGCAGAAAGCCATATTCTGTTG
TGCTGCTGGATGAAATTGAAAAGGCACATCCTGATGTATTTAACATCCTTTTACAGGTATTGGAAGACGGAAGATTAACA
GATTCTAAAGGGAGAACCGTTGATTTCCGCAATACCGTTCTGATTATGACATCCAATGTAGGCGCTGAAGCACTTAAGCG
AAACAAATATGTTGGATTTAACATCCAGGATGGGGAACAGGATTACAAAGATATGAAAGGGAAAGTAATGGAAGAGATGA
AGAAGTCCTTCCGTCCGGAATTCCTGAACCGTATTGATGAAATCATCGTTTTCCATGCATTGGAGAAAAAGCATCTTCAG
GAAATCGTTACACTTATGTCTGACACCTTAACGAAACGATTGAAGGAACAGGACATTACATTGGAATTGACGGATGCAGC
CAAAGAAAAAATCTCGGTAGAAGGCTACGACCCAGAGTACGGAGCACGTCCGCTCCGCAGGGCGATTCAAAAGCATATTG
AAGATCGCTTATCCGAGGAACTGTTAAAAGGAACGGTACTAACCGGGCAAAGCGTGGTAATCGATGTGAAAGATGGAGAG
TTTGTAGTGAAAACGGCTGAACCAAGCGGGGCGCCAAATCTTCAGAAATAA
ATGATGTTCGGACGATTTACGGAAAGAGCTCAAAAAGTATTGGCTTTAGCACAGGAGGAAGCAATCCGTTTAGGACATAA
CAACATCGGGACAGAGCATATTCTGCTGGGACTTGTACGCGAAGGTGAAGGCATTGCAGCAAAAGCTCTCTATGCTTTAG
GCCTCGGCTCTGATAAGATCCAAAAAGAGGTTGAGAATTTAATAGGCAGGGGGCAGGATGCTTCCCAGACCATTCATTAT
ACACCACGTGCCAAGAAAGTCATTGAACTTTCCATGGACGAAGCAAGAAAGCTTGGCCATTCCTATGTAGGAACAGAGCA
TATCCTGCTTGGCCTGATCCGTGAGGGTGAAGGAGTTGCAGCGAGAGTCCTGAATAATCTTGGAGTCAGCCTCAATAAAG
CTCGCCAGCAAGTGCTTCAGCTATTAGGAAGCAATGAGTCCGGCAGTCATCAGGGTGGCTCCGCAGCCAATGCGAACACA
CCGACACTGGATGGATTGGCACGTGACTTGACTGCTATTGCCAGAGAAGGAAGCTTGGATCCGGTTATTGGACGAAGCAA
AGAAATTCAGCGTGTAATCGAAGTATTAAGCCGCAGGACGAAAAATAACCCAGTTCTTATCGGTGAGCCTGGGGTAGGTA
AAACAGCCATCGCAGAGGGCTTGGCACAGCAGATCATTAATAATGAAGTGCCTGAGACTCTTCGTGATAAAAGGGTTATG
ACGCTTGATATGGGTACAGTAGTTGCCGGAACAAAGTATCGCGGTGAATTTGAAGACCGCTTGAAGAAGGTAATGGATGA
AATCAGGCAGGCCGGAAACATCATTTTATTTATTGACGAGCTTCATACATTAATAGGTGCAGGCGGAGCAGAAGGTGCGA
TCGATGCTTCCAACATCTTAAAGCCTTCTCTGGCCCGCGGTGAACTTCAGTGTATTGGTGCAACAACTCTTGATGAGTAC
AGAAAATACATTGAAAAGGATGCGGCACTTGAAAGAAGATTCCAGCCTATTACGGTTGATGAGCCGACTGCGGAAGAATC
GGTACAGATTCTTGAAGGTCTTCGTGACCGTTATGAGGCACACCATCGCGTGACGATTACGGATGCAGCCATTCAAGCCG
CTGTAAAACTATCAGACCGCTACATCTCAGACCGCTTCCTTCCGGATAAAGCGATTGATTTAATTGACGAAGCGGGTTCA
AAGGTAAGACTTCGCTCTTACACTACACCTCCAAACCTGAAAGAACTGGAGGTTAAGCTGGAGGATGTAAGGAAAGAAAA
AGACGCTGCCGTTCAAAGCCAGGAGTTTGAAAAGGCGGCTTCCTTAAGAGATACAGAGCAGCGCCTGCGCGAACAGCTTG
AAGAAACGAAGAAGACATGGAAAGAAAAGCAGGGCAAAGAGAACAGTGAAGTGACGGTTGAGGATATCGCCAATGTGGTG
GCCAGCTGGACTGGAATCCCTGTATCGAAGCTGGCCCAAACAGAAACAGAAAAGCTTCTGAACCTGGAAGAAATTCTTCA
TTCCCGTGTAATCGGACAGGAAGAAGCGGTTAAAGCCATTTCGAAGGCTGTCCGCCGTGCCCGTGCAGGCCTTAAAGATC
CGAAGCGCCCTATTGGCTCATTTGTATTCCTTGGGCCGACTGGGGTAGGTAAAACAGAGTTAGCCCGTGCATTAGCAGAA
GCGATGTTCGGTGACGAGGATGCGATGATCCGCATCGATATGTCAGAATACATGGAGAAGCACTCCACATCCCGTCTGGT
AGGTTCGCCTCCGGGTTATGTAGGATATGAAGAAGGCGGGCAGTTAACCGAAAAGGTCCGCAGAAAGCCATATTCTGTTG
TGCTGCTGGATGAAATTGAAAAGGCACATCCTGATGTATTTAACATCCTTTTACAGGTATTGGAAGACGGAAGATTAACA
GATTCTAAAGGGAGAACCGTTGATTTCCGCAATACCGTTCTGATTATGACATCCAATGTAGGCGCTGAAGCACTTAAGCG
AAACAAATATGTTGGATTTAACATCCAGGATGGGGAACAGGATTACAAAGATATGAAAGGGAAAGTAATGGAAGAGATGA
AGAAGTCCTTCCGTCCGGAATTCCTGAACCGTATTGATGAAATCATCGTTTTCCATGCATTGGAGAAAAAGCATCTTCAG
GAAATCGTTACACTTATGTCTGACACCTTAACGAAACGATTGAAGGAACAGGACATTACATTGGAATTGACGGATGCAGC
CAAAGAAAAAATCTCGGTAGAAGGCTACGACCCAGAGTACGGAGCACGTCCGCTCCGCAGGGCGATTCAAAAGCATATTG
AAGATCGCTTATCCGAGGAACTGTTAAAAGGAACGGTACTAACCGGGCAAAGCGTGGTAATCGATGTGAAAGATGGAGAG
TTTGTAGTGAAAACGGCTGAACCAAGCGGGGCGCCAAATCTTCAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
88.82 |
98.652 |
0.876 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.377 |
98.284 |
0.485 |
| clpC | Streptococcus thermophilus LMD-9 |
47.711 |
100 |
0.485 |
| clpC | Streptococcus thermophilus LMG 18311 |
47.101 |
100 |
0.478 |
| clpC | Streptococcus mutans UA159 |
45.521 |
100 |
0.461 |
| clpC | Streptococcus pneumoniae D39 |
46.106 |
99.142 |
0.457 |
| clpC | Streptococcus pneumoniae Rx1 |
46.106 |
99.142 |
0.457 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.983 |
99.142 |
0.456 |
| clpE | Streptococcus mutans UA159 |
55.288 |
76.471 |
0.423 |
| clpE | Streptococcus pneumoniae TIGR4 |
54.662 |
76.225 |
0.417 |
| clpE | Streptococcus pneumoniae R6 |
54.414 |
76.348 |
0.415 |
| clpE | Streptococcus pneumoniae Rx1 |
54.414 |
76.348 |
0.415 |
| clpE | Streptococcus pneumoniae D39 |
54.414 |
76.348 |
0.415 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
54.12 |
75.858 |
0.411 |