Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NUW85_RS11460 Genome accession   NZ_CP102603
Coordinates   2387900..2388496 (-) Length   198 a.a.
NCBI ID   WP_003150697.1    Uniprot ID   A7Z0E4
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2382900..2393496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS11450 (NUW85_11455) - 2387333..2387596 (-) 264 WP_003150686.1 pro-sigmaK processing inhibitor BofA family protein -
  NUW85_RS11455 (NUW85_11460) - 2387657..2387881 (-) 225 WP_007408755.1 YaaL family protein -
  NUW85_RS11460 (NUW85_11465) recR 2387900..2388496 (-) 597 WP_003150697.1 recombination protein RecR Machinery gene
  NUW85_RS11465 (NUW85_11470) - 2388511..2388834 (-) 324 WP_003150700.1 YbaB/EbfC family nucleoid-associated protein -
  NUW85_RS11470 (NUW85_11475) dnaX 2388859..2390550 (-) 1692 WP_003150701.1 DNA polymerase III subunit gamma/tau -
  NUW85_RS11480 (NUW85_11485) tadA 2391031..2391513 (-) 483 WP_003150702.1 tRNA adenosine(34) deaminase TadA -
  NUW85_RS11485 (NUW85_11490) - 2391635..2392147 (+) 513 WP_046341463.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21990.53 Da        Isoelectric Point: 5.3504

>NTDB_id=617451 NUW85_RS11460 WP_003150697.1 2387900..2388496(-) (recR) [Bacillus amyloliquefaciens strain MBLB0692]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDTVLDFAKALVNAKRNLTYCSICGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=617451 NUW85_RS11460 WP_003150697.1 2387900..2388496(-) (recR) [Bacillus amyloliquefaciens strain MBLB0692]
ATGCAGTATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGACACAGTATTGGATTTTGCTAAGGCGCTTGTCAATGCGAAGCGGAATC
TGACATATTGCTCGATTTGCGGACATATTACAGATCAGGACCCTTGTTATATATGTGAGGACACAAGAAGGGATAAGTCT
GTTATTTGTGTCGTGCAGGACCCTAAGGATGTGATCGCAATGGAGAAAATGAAGGAATATAACGGCCAGTATCATGTTCT
TCACGGCGCGATTTCACCAATGGACGGCATCGGTCCGGAGGATATTAAGATTCCGGAGCTGCTGAAACGTCTTCAGGATG
ATCAAGTGACAGAAGTTATTCTCGCAACCAACCCTAATATTGAAGGGGAAGCAACAGCGATGTATATATCAAGGCTGTTA
AAGCCCTCAGGCATCAAGCTCTCCCGTATTGCCCACGGTCTGCCCGTCGGCGGTGATTTGGAATATGCTGATGAGGTCAC
TCTTTCAAAAGCTCTTGAAGGAAGACGTGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  recR Streptococcus pneumoniae R6

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.551

98.99

0.52