Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LIT27_RS07800 Genome accession   NZ_CP085392
Coordinates   1479220..1479414 (+) Length   64 a.a.
NCBI ID   WP_009331228.1    Uniprot ID   A0A169G1N2
Organism   Cytobacillus oceanisediminis strain CK22     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474220..1484414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT27_RS07780 (LIT27_07795) - 1476057..1476248 (-) 192 WP_009331232.1 DUF2929 family protein -
  LIT27_RS07785 (LIT27_07800) - 1476463..1477200 (+) 738 WP_252246115.1 alpha/beta hydrolase -
  LIT27_RS07790 (LIT27_07805) - 1477282..1478115 (+) 834 WP_009331230.1 hypothetical protein -
  LIT27_RS07795 (LIT27_07810) med 1478234..1479193 (+) 960 WP_071157530.1 BMP family ABC transporter substrate-binding protein Regulator
  LIT27_RS07800 (LIT27_07815) comZ 1479220..1479414 (+) 195 WP_009331228.1 ComZ family protein Regulator
  LIT27_RS07805 (LIT27_07820) - 1480347..1481348 (+) 1002 WP_232292456.1 nuclease-related domain-containing protein -
  LIT27_RS07810 (LIT27_07825) - 1481359..1481742 (-) 384 WP_252246116.1 hypothetical protein -
  LIT27_RS07815 (LIT27_07830) - 1481958..1482890 (+) 933 WP_009331225.1 beta-ketoacyl-ACP synthase III -
  LIT27_RS07820 (LIT27_07835) fabF 1482939..1484177 (+) 1239 WP_251263754.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 64 a.a.        Molecular weight: 7481.71 Da        Isoelectric Point: 4.1018

>NTDB_id=617450 LIT27_RS07800 WP_009331228.1 1479220..1479414(+) (comZ) [Cytobacillus oceanisediminis strain CK22]
MQLNEKNMEFMQIAMKYLPEAKQQLDEAGIELSMEMIQPFMNLFTKVMNEAYEMGKADALKESE

Nucleotide


Download         Length: 195 bp        

>NTDB_id=617450 LIT27_RS07800 WP_009331228.1 1479220..1479414(+) (comZ) [Cytobacillus oceanisediminis strain CK22]
ATGCAGCTAAACGAAAAAAATATGGAATTCATGCAAATCGCCATGAAATACCTGCCAGAAGCCAAACAGCAGCTTGACGA
AGCAGGCATTGAACTATCCATGGAAATGATCCAGCCATTCATGAACCTATTCACCAAAGTCATGAACGAAGCCTACGAAA
TGGGTAAAGCGGATGCTTTGAAAGAGAGTGAGTGA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(5-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A169G1N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

73.77

95.313

0.703