Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LIT27_RS07795 Genome accession   NZ_CP085392
Coordinates   1478234..1479193 (+) Length   319 a.a.
NCBI ID   WP_071157530.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain CK22     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473234..1484193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT27_RS07775 (LIT27_07790) clpB 1473390..1475987 (+) 2598 WP_251174408.1 ATP-dependent chaperone ClpB -
  LIT27_RS07780 (LIT27_07795) - 1476057..1476248 (-) 192 WP_009331232.1 DUF2929 family protein -
  LIT27_RS07785 (LIT27_07800) - 1476463..1477200 (+) 738 WP_252246115.1 alpha/beta hydrolase -
  LIT27_RS07790 (LIT27_07805) - 1477282..1478115 (+) 834 WP_009331230.1 hypothetical protein -
  LIT27_RS07795 (LIT27_07810) med 1478234..1479193 (+) 960 WP_071157530.1 BMP family ABC transporter substrate-binding protein Regulator
  LIT27_RS07800 (LIT27_07815) comZ 1479220..1479414 (+) 195 WP_009331228.1 ComZ family protein Regulator
  LIT27_RS07805 (LIT27_07820) - 1480347..1481348 (+) 1002 WP_232292456.1 nuclease-related domain-containing protein -
  LIT27_RS07810 (LIT27_07825) - 1481359..1481742 (-) 384 WP_252246116.1 hypothetical protein -
  LIT27_RS07815 (LIT27_07830) - 1481958..1482890 (+) 933 WP_009331225.1 beta-ketoacyl-ACP synthase III -
  LIT27_RS07820 (LIT27_07835) fabF 1482939..1484177 (+) 1239 WP_251263754.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35492.13 Da        Isoelectric Point: 4.4450

>NTDB_id=617449 LIT27_RS07795 WP_071157530.1 1478234..1479193(+) (med) [Cytobacillus oceanisediminis strain CK22]
MHKTLVKFGILLLCLLLLASCGQSMSTGKLEKAGLLVPDTVNDQVWGTKGYKGMLKIQSHYNVEVYYKEGMNSEMVVERA
VKEFDQKGVNLIFGHGNEYAAYFNNISKKYPDIHFVSFNGDAKNDNTTSLNFEAYAMGFFGGMVAGHMTKTNNIGILAAF
EWQPEVEGFYQGVSEIDEGINVQIQYVGNWDNDNKAIALLDKMIANKTDVVYPAGDGYNVPVIEKLKEEGLYAIGYISDQ
ADLGESVVLTSTVQHVDVLYELVAKKFNEGELESGNLTFDFEDEVISLGKFSPDVDEEFKKELNAAIENYKKTGKLPNE

Nucleotide


Download         Length: 960 bp        

>NTDB_id=617449 LIT27_RS07795 WP_071157530.1 1478234..1479193(+) (med) [Cytobacillus oceanisediminis strain CK22]
ATGCATAAGACATTAGTGAAATTCGGGATCCTTCTTTTGTGCCTTCTTTTATTGGCCTCCTGCGGACAATCGATGTCTAC
AGGAAAACTTGAAAAAGCTGGATTATTAGTGCCCGATACCGTCAATGATCAGGTATGGGGGACGAAAGGCTATAAAGGCA
TGTTAAAGATTCAATCCCATTATAATGTGGAGGTTTATTATAAAGAGGGCATGAATTCTGAGATGGTTGTTGAAAGAGCT
GTTAAAGAGTTTGATCAAAAAGGTGTAAACCTGATTTTTGGACATGGCAATGAATACGCGGCATACTTTAATAACATTTC
AAAAAAATACCCTGACATTCATTTTGTCAGCTTTAATGGCGATGCCAAAAATGACAACACCACCAGCTTGAATTTTGAAG
CCTATGCAATGGGATTCTTTGGCGGCATGGTTGCTGGCCATATGACGAAAACCAATAACATAGGAATACTCGCAGCTTTT
GAATGGCAGCCGGAGGTAGAAGGTTTTTATCAAGGTGTAAGCGAAATTGATGAAGGTATAAACGTGCAAATCCAATATGT
CGGCAACTGGGACAATGATAATAAAGCCATAGCTCTCTTGGACAAAATGATTGCCAATAAGACAGATGTTGTCTATCCAG
CTGGAGATGGGTATAATGTTCCTGTCATCGAGAAACTAAAAGAGGAAGGGCTCTACGCCATCGGCTATATTTCCGACCAG
GCTGATCTGGGTGAATCAGTCGTCCTGACCAGTACGGTTCAGCATGTCGATGTTTTGTATGAACTAGTGGCAAAAAAATT
CAACGAAGGCGAATTGGAATCAGGAAATCTAACCTTTGATTTCGAGGATGAAGTTATTTCACTTGGGAAATTCAGCCCTG
ACGTCGACGAAGAATTCAAAAAAGAACTAAACGCTGCCATTGAGAATTACAAAAAAACAGGCAAACTGCCTAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

53.035

98.119

0.52