Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIS77_RS18280 Genome accession   NZ_CP085390
Coordinates   3594617..3596299 (-) Length   560 a.a.
NCBI ID   WP_163143357.1    Uniprot ID   -
Organism   Cytobacillus firmus strain CK19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3589617..3601299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS77_RS18260 (LIS77_18285) - 3591368..3591604 (+) 237 WP_048008222.1 DUF2627 domain-containing protein -
  LIS77_RS18265 (LIS77_18290) - 3591622..3591762 (+) 141 WP_082138922.1 YycC family protein -
  LIS77_RS18270 (LIS77_18295) spo0A 3592044..3592832 (-) 789 WP_048008223.1 sporulation transcription factor Spo0A -
  LIS77_RS18275 (LIS77_18300) spoIVB 3593145..3594434 (-) 1290 WP_163143354.1 SpoIVB peptidase -
  LIS77_RS18280 (LIS77_18305) recN 3594617..3596299 (-) 1683 WP_163143357.1 DNA repair protein RecN Machinery gene
  LIS77_RS18285 (LIS77_18310) argR 3596388..3596837 (-) 450 WP_009332889.1 transcriptional regulator ArgR -
  LIS77_RS18290 (LIS77_18315) - 3597009..3597854 (-) 846 WP_048008226.1 TlyA family RNA methyltransferase -
  LIS77_RS18295 (LIS77_18320) dxs 3597858..3599750 (-) 1893 WP_159344688.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIS77_RS18300 (LIS77_18325) - 3600405..3601298 (-) 894 WP_061791222.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63217.29 Da        Isoelectric Point: 5.2235

>NTDB_id=617411 LIS77_RS18280 WP_163143357.1 3594617..3596299(-) (recN) [Cytobacillus firmus strain CK19]
MLNEITIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAELEGLFILDDPKHPCYKR
AAEFGIDIEDGMIVLRRDISKAGKSICRVNGKLVTISALREIGSSLIDIHGQHEHQELMNETLHLPLLDQFGGTKISASL
SEYQDIYRLYESTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLNEDEDLIEEKRKLSNFERIFDSVQSGYNALQG
EQKGLDWIGLVMGYMNDAAELDPSYKEIAENVANSFYLLEDAASSLRNEMDFMEYDPQRLNEIENRLNEINGLKRKYGKT
VEEVLEYAAKIEEEIETLQNKETHIDKLQKEVTALKKDLMVEGEELSKLRRKSALKLTKLIHKELKELYMEKTVFEVRFF
SDPEVLLKNGIDRAEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSVDSQVLCISHLPQVAAIADTHLFIAKNTNEGRTKTTVKPLNEEEKIKEISRMISGVEITDLTKEHAKELLHMAKQLK

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=617411 LIS77_RS18280 WP_163143357.1 3594617..3596299(-) (recN) [Cytobacillus firmus strain CK19]
TTGTTAAATGAAATAACGATACGAAATTTTGCTATAATCGAAGCCCTTTCTGTCTCATTTGAAAAGGGCTTAACTGTTTT
AACTGGTGAAACAGGGGCAGGGAAATCCATTATTATTGATGCCATTCACTTGCTGGCTGGAGGCAGGGGATCTGCAGAGT
TTGTCCGGCATGGTGAAGATAAAGCTGAGTTAGAGGGGCTTTTTATCCTGGATGATCCTAAGCACCCTTGCTATAAACGA
GCTGCAGAATTTGGGATAGATATTGAAGATGGAATGATTGTTCTCCGCAGAGATATATCAAAGGCAGGAAAAAGCATTTG
CAGAGTGAATGGAAAACTGGTCACTATTTCTGCTTTGAGGGAAATCGGAAGTTCACTTATTGATATACACGGTCAGCACG
AACATCAGGAATTAATGAATGAAACCTTGCATCTTCCACTTCTCGATCAGTTTGGAGGAACGAAGATTTCTGCTTCCCTT
TCTGAATATCAGGATATCTACAGATTATATGAAAGCACCTTGAAAAAGCTTAAGAATTTAAGCGAGAATGAACAGCAAAT
GGCACACCGGCTTGATTTAATCCAATTTCAGCTTGATGAAATCCAGTCAGCACAGCTAAAATTGAATGAAGATGAGGATC
TGATTGAAGAAAAGAGAAAGCTATCCAATTTTGAACGTATTTTTGACTCAGTTCAGTCTGGCTATAATGCTCTTCAAGGA
GAGCAAAAAGGGCTCGATTGGATTGGGCTGGTTATGGGGTATATGAATGATGCCGCGGAATTGGACCCATCGTATAAAGA
AATAGCGGAAAATGTGGCAAACAGCTTCTATTTGCTTGAAGATGCGGCCAGTTCCCTGCGCAATGAAATGGACTTTATGG
AATATGATCCCCAGAGGCTCAATGAAATCGAAAACAGACTGAATGAAATAAATGGTCTAAAAAGAAAATATGGAAAAACG
GTAGAAGAAGTGCTGGAATACGCAGCAAAAATAGAAGAAGAAATTGAAACCTTGCAAAATAAAGAAACCCATATTGATAA
GCTGCAAAAAGAAGTTACTGCCCTGAAAAAAGACCTTATGGTTGAAGGGGAAGAACTGAGCAAGCTGCGGAGAAAATCTG
CCCTAAAGCTTACGAAGTTAATTCATAAAGAGCTTAAGGAATTATACATGGAAAAAACAGTTTTTGAGGTAAGATTCTTT
TCTGATCCCGAAGTCCTTCTGAAAAATGGCATTGACAGAGCGGAATTCTATATTTCCACCAATCCGGGAGAACCGCTCAA
GCCTCTGTCTAAGATTGCATCGGGAGGGGAATTATCCCGAATCATGCTTGCCTTGAAGAGTATTTTCTCAAAACATCAAG
GTGTTACAAGTATTATCTTCGATGAAGTGGATACAGGCGTGAGCGGAAGAGTGGCACAAGCTATCGCGGAAAAGATTCAT
CATGTTTCCGTGGATTCACAAGTGCTTTGCATCTCTCACCTGCCACAGGTTGCAGCGATTGCAGATACTCATTTATTTAT
TGCTAAAAACACGAATGAAGGACGGACCAAAACTACAGTGAAGCCTCTGAATGAAGAAGAGAAGATAAAAGAAATCAGCC
GTATGATTTCTGGAGTGGAAATAACCGATTTGACGAAAGAGCATGCAAAAGAGCTGCTGCATATGGCTAAACAGCTGAAA
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.847

100

0.634