Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LIS77_RS07180 Genome accession   NZ_CP085390
Coordinates   1348152..1348340 (+) Length   62 a.a.
NCBI ID   WP_197245493.1    Uniprot ID   -
Organism   Cytobacillus firmus strain CK19     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343152..1353340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS77_RS07160 (LIS77_07165) - 1345038..1345229 (-) 192 WP_048010975.1 DUF2929 family protein -
  LIS77_RS07165 (LIS77_07170) - 1345411..1346148 (+) 738 WP_252221300.1 alpha/beta hydrolase -
  LIS77_RS07170 (LIS77_07175) - 1346229..1347056 (+) 828 WP_252221302.1 hypothetical protein -
  LIS77_RS07175 (LIS77_07180) med 1347166..1348122 (+) 957 WP_048010972.1 BMP family ABC transporter substrate-binding protein Regulator
  LIS77_RS07180 (LIS77_07185) comZ 1348152..1348340 (+) 189 WP_197245493.1 ComZ family protein Regulator
  LIS77_RS07185 (LIS77_07190) - 1348396..1348782 (-) 387 WP_252221304.1 hypothetical protein -
  LIS77_RS07190 (LIS77_07195) - 1348998..1349930 (+) 933 WP_252221306.1 beta-ketoacyl-ACP synthase III -
  LIS77_RS07195 (LIS77_07200) fabF 1349977..1351215 (+) 1239 WP_252221308.1 beta-ketoacyl-ACP synthase II -
  LIS77_RS07200 (LIS77_07205) - 1351454..1352119 (+) 666 WP_252221310.1 DUF2268 domain-containing putative Zn-dependent protease -
  LIS77_RS07205 (LIS77_07210) - 1352267..1353292 (+) 1026 WP_197207661.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7256.38 Da        Isoelectric Point: 3.9646

>NTDB_id=617396 LIS77_RS07180 WP_197245493.1 1348152..1348340(+) (comZ) [Cytobacillus firmus strain CK19]
MNEKNMEFMQIAMKYLPEAKQQLDEAGIELSMEMIQPFMNLFTKVMNEAYEMGKTDALNESE

Nucleotide


Download         Length: 189 bp        

>NTDB_id=617396 LIS77_RS07180 WP_197245493.1 1348152..1348340(+) (comZ) [Cytobacillus firmus strain CK19]
ATGAACGAAAAAAACATGGAATTCATGCAAATCGCAATGAAATACTTGCCAGAAGCCAAACAGCAGCTTGACGAAGCTGG
CATCGAGCTATCTATGGAAATGATCCAGCCATTCATGAACCTATTCACCAAAGTCATGAACGAAGCCTATGAAATGGGCA
AAACGGATGCTTTGAATGAGAGTGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(3-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

73.77

98.387

0.726