Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LIS77_RS07175 Genome accession   NZ_CP085390
Coordinates   1347166..1348122 (+) Length   318 a.a.
NCBI ID   WP_048010972.1    Uniprot ID   A0AA46SKU2
Organism   Cytobacillus firmus strain CK19     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342166..1353122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS77_RS07155 (LIS77_07160) clpB 1342371..1344968 (+) 2598 WP_252221298.1 ATP-dependent chaperone ClpB -
  LIS77_RS07160 (LIS77_07165) - 1345038..1345229 (-) 192 WP_048010975.1 DUF2929 family protein -
  LIS77_RS07165 (LIS77_07170) - 1345411..1346148 (+) 738 WP_252221300.1 alpha/beta hydrolase -
  LIS77_RS07170 (LIS77_07175) - 1346229..1347056 (+) 828 WP_252221302.1 hypothetical protein -
  LIS77_RS07175 (LIS77_07180) med 1347166..1348122 (+) 957 WP_048010972.1 BMP family ABC transporter substrate-binding protein Regulator
  LIS77_RS07180 (LIS77_07185) comZ 1348152..1348340 (+) 189 WP_197245493.1 ComZ family protein Regulator
  LIS77_RS07185 (LIS77_07190) - 1348396..1348782 (-) 387 WP_252221304.1 hypothetical protein -
  LIS77_RS07190 (LIS77_07195) - 1348998..1349930 (+) 933 WP_252221306.1 beta-ketoacyl-ACP synthase III -
  LIS77_RS07195 (LIS77_07200) fabF 1349977..1351215 (+) 1239 WP_252221308.1 beta-ketoacyl-ACP synthase II -
  LIS77_RS07200 (LIS77_07205) - 1351454..1352119 (+) 666 WP_252221310.1 DUF2268 domain-containing putative Zn-dependent protease -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35572.16 Da        Isoelectric Point: 4.4144

>NTDB_id=617395 LIS77_RS07175 WP_048010972.1 1347166..1348122(+) (med) [Cytobacillus firmus strain CK19]
MHKTLKKLGILLLCLLLLASCRQPMSAGKLEKAGLLVPDTVNDQVWGTKGYKGMLKIQSHYDIEVYYKEGMNSEMVVERA
VKEFDQKGVNLIFGHGNEYAAYFNNISKKYPDIHFVSFNGDAQNENTTSLNFEAYAMGFFGGMVAGHMTKTNNVGILAAF
EWQPEVEGFYEGANYINDNVNVQIQYVGNWDNDNKAIALLDKLIANKTDVVYPAGDGYNVPVIEKLKEEGLYAIGYISDQ
SDLGESVVLTSTIQHVDVLYELVAEKYNEGELESGNLSFDFEDEVISLGKFSPDVDEEFKKELNAVIENYKKTGKLPE

Nucleotide


Download         Length: 957 bp        

>NTDB_id=617395 LIS77_RS07175 WP_048010972.1 1347166..1348122(+) (med) [Cytobacillus firmus strain CK19]
ATGCATAAGACATTAAAGAAATTAGGGATCCTTCTTTTGTGCCTTCTTTTATTGGCCTCCTGCAGACAGCCGATGTCTGC
AGGAAAACTTGAGAAAGCTGGATTATTAGTGCCCGATACTGTCAATGACCAAGTATGGGGGACCAAAGGCTATAAAGGCA
TGCTAAAAATTCAATCCCATTATGATATTGAGGTTTATTATAAAGAAGGTATGAATTCAGAGATGGTTGTTGAAAGAGCT
GTTAAAGAGTTTGACCAAAAAGGTGTAAACCTGATCTTTGGACATGGCAATGAATACGCTGCTTACTTTAATAACATCTC
AAAAAAATATCCTGACATTCACTTTGTCAGCTTTAATGGTGACGCCCAAAATGAAAACACCACCAGTTTGAACTTTGAAG
CATATGCCATGGGTTTCTTCGGAGGCATGGTTGCAGGACATATGACGAAAACGAATAATGTAGGAATACTGGCGGCTTTT
GAATGGCAGCCGGAAGTAGAAGGTTTTTATGAAGGTGCAAACTATATCAATGATAATGTAAACGTGCAGATCCAATATGT
CGGCAACTGGGACAATGATAACAAAGCCATCGCTCTTTTGGACAAACTTATTGCCAATAAGACAGATGTTGTATATCCGG
CCGGAGATGGGTATAATGTTCCTGTTATCGAAAAGCTGAAAGAAGAAGGGCTCTACGCCATCGGATATATTTCCGATCAG
TCTGATTTGGGTGAATCAGTCGTCCTGACCAGTACAATTCAGCATGTAGATGTTTTATATGAACTGGTGGCAGAAAAATA
TAACGAAGGTGAGCTTGAATCAGGAAATCTATCCTTCGATTTCGAGGATGAAGTGATTTCACTTGGGAAATTCAGCCCTG
ACGTCGACGAAGAATTCAAAAAAGAACTAAACGCTGTCATTGAGAATTACAAAAAAACAGGCAAATTGCCTGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.229

98.742

0.516