Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LIS79_RS16560 Genome accession   NZ_CP085389
Coordinates   3161731..3162327 (+) Length   198 a.a.
NCBI ID   WP_007500118.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CMF5     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3156731..3167327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS16540 (LIS79_16545) - 3158186..3159352 (-) 1167 WP_060832674.1 macrolide family glycosyltransferase -
  LIS79_RS16545 (LIS79_16550) - 3159520..3160410 (-) 891 WP_060832839.1 ABC transporter substrate-binding protein -
  LIS79_RS16550 (LIS79_16555) - 3160644..3161108 (-) 465 WP_041091289.1 DinB family protein -
  LIS79_RS16560 (LIS79_16565) clpP 3161731..3162327 (+) 597 WP_007500118.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  LIS79_RS16565 (LIS79_16570) - 3162383..3162961 (-) 579 WP_048001956.1 TIGR00730 family Rossman fold protein -
  LIS79_RS16570 (LIS79_16575) - 3163098..3163439 (+) 342 WP_008347798.1 MazG-like family protein -
  LIS79_RS16575 (LIS79_16580) - 3163662..3165284 (-) 1623 WP_017368103.1 SulP family inorganic anion transporter -
  LIS79_RS16580 (LIS79_16585) - 3165322..3165903 (-) 582 WP_116306263.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21846.03 Da        Isoelectric Point: 4.6905

>NTDB_id=617368 LIS79_RS16560 WP_007500118.1 3161731..3162327(+) (clpP) [Bacillus altitudinis strain CMF5]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=617368 LIS79_RS16560 WP_007500118.1 3161731..3162327(+) (clpP) [Bacillus altitudinis strain CMF5]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTATCACAGCTTCTCTTCTTAGAAGCCG
AGGATCCAGAAAAAGATATCTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAATAGTGAAGTGATGATTCACCAACCACTAGGTGGTGCGCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTTAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATACAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

93.434

100

0.934
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pneumoniae Rx1

55.67

97.98

0.545
  clpP Streptococcus pneumoniae D39

55.67

97.98

0.545
  clpP Streptococcus pneumoniae R6

55.67

97.98

0.545
  clpP Streptococcus pneumoniae TIGR4

55.67

97.98

0.545
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53