Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LIS79_RS11605 Genome accession   NZ_CP085389
Coordinates   2248663..2248998 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CMF5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2243663..2253998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS11585 (LIS79_11590) gcvT 2244139..2245236 (-) 1098 WP_041091751.1 glycine cleavage system aminomethyltransferase GcvT -
  LIS79_RS11590 (LIS79_11595) - 2245798..2247468 (+) 1671 WP_008342199.1 SNF2-related protein -
  LIS79_RS11595 (LIS79_11600) - 2247483..2248280 (+) 798 WP_017367588.1 YqhG family protein -
  LIS79_RS11600 (LIS79_11605) - 2248465..2248629 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  LIS79_RS11605 (LIS79_11610) sinR 2248663..2248998 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  LIS79_RS11610 (LIS79_11615) tasA 2249066..2249866 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  LIS79_RS11615 (LIS79_11620) sipW 2249925..2250497 (-) 573 WP_041091749.1 signal peptidase I SipW -
  LIS79_RS11620 (LIS79_11625) tapA 2250547..2251074 (-) 528 WP_041091748.1 amyloid fiber anchoring/assembly protein TapA -
  LIS79_RS11625 (LIS79_11630) - 2251327..2251653 (+) 327 WP_007501224.1 DUF3889 domain-containing protein -
  LIS79_RS11630 (LIS79_11635) - 2251688..2251882 (-) 195 WP_008342191.1 YqzE family protein -
  LIS79_RS11635 (LIS79_11640) comGG 2251943..2252326 (-) 384 WP_041091746.1 competence type IV pilus minor pilin ComGG -
  LIS79_RS11640 (LIS79_11645) comGF 2252323..2252820 (-) 498 WP_041091745.1 competence type IV pilus minor pilin ComGF -
  LIS79_RS11645 (LIS79_11650) comGE 2252762..2253076 (-) 315 WP_017357984.1 competence type IV pilus minor pilin ComGE -
  LIS79_RS11650 (LIS79_11655) comGD 2253060..2253506 (-) 447 WP_017357985.1 competence type IV pilus minor pilin ComGD -
  LIS79_RS11655 (LIS79_11660) comGC 2253499..2253792 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=617351 LIS79_RS11605 WP_017357978.1 2248663..2248998(+) (sinR) [Bacillus altitudinis strain CMF5]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=617351 LIS79_RS11605 WP_017357978.1 2248663..2248998(+) (sinR) [Bacillus altitudinis strain CMF5]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928