Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LIS79_RS11410 Genome accession   NZ_CP085389
Coordinates   2213733..2214536 (-) Length   267 a.a.
NCBI ID   WP_008342226.1    Uniprot ID   A0A5K1NAR3
Organism   Bacillus altitudinis strain CMF5     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2208733..2219536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS11395 (LIS79_11400) - 2210949..2211185 (+) 237 WP_017357960.1 DUF2627 domain-containing protein -
  LIS79_RS11400 (LIS79_11405) - 2211219..2211956 (-) 738 WP_017367573.1 glycerophosphodiester phosphodiesterase -
  LIS79_RS11405 (LIS79_11410) - 2212183..2213283 (-) 1101 WP_007501159.1 Rap family tetratricopeptide repeat protein -
  LIS79_RS11410 (LIS79_11415) spo0A 2213733..2214536 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  LIS79_RS11415 (LIS79_11420) spoIVB 2214820..2216097 (-) 1278 WP_060832426.1 SpoIVB peptidase -
  LIS79_RS11420 (LIS79_11425) recN 2216296..2218029 (-) 1734 WP_035390783.1 DNA repair protein RecN Machinery gene
  LIS79_RS11425 (LIS79_11430) argR 2218064..2218513 (-) 450 WP_007501163.1 transcriptional regulator ArgR -
  LIS79_RS11430 (LIS79_11435) - 2218675..2219529 (-) 855 WP_007501164.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29891.41 Da        Isoelectric Point: 6.3918

>NTDB_id=617349 LIS79_RS11410 WP_008342226.1 2213733..2214536(-) (spo0A) [Bacillus altitudinis strain CMF5]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVSHRSSSIQNSVLRSKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=617349 LIS79_RS11410 WP_008342226.1 2213733..2214536(-) (spo0A) [Bacillus altitudinis strain CMF5]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAACTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGAAATGACCAAACAG
CCAAGTGTCATTATGCTGACGGCTTTCGGACAAGAAGACGTAACGAAAAAAGCAGTCGATTTGGGCGCATCCTACTTCAT
TTTGAAACCATTCGATATGGAAAACCTCGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCAGCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGCAGCAAACCTGAACCGAAACGTAAGAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTGCCAGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGATAT
TGAACTACTTGGCAGTATTACAAAAGTATTGTACCCAGACATTGCAAAGAAATTTAACACGACAGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTGGCTTGGAGCAGAGGGAATATTGACTCCATTTCGTCACTCTTTGGCTACACAGTC
AGCATGTCAAAAGCCAAACCGACCAATTCAGAATTTATTGCGATGGTGGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884