Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIS79_RS11420 Genome accession   NZ_CP085389
Coordinates   2216296..2218029 (-) Length   577 a.a.
NCBI ID   WP_035390783.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CMF5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2211296..2223029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS11405 (LIS79_11410) - 2212183..2213283 (-) 1101 WP_007501159.1 Rap family tetratricopeptide repeat protein -
  LIS79_RS11410 (LIS79_11415) spo0A 2213733..2214536 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  LIS79_RS11415 (LIS79_11420) spoIVB 2214820..2216097 (-) 1278 WP_060832426.1 SpoIVB peptidase -
  LIS79_RS11420 (LIS79_11425) recN 2216296..2218029 (-) 1734 WP_035390783.1 DNA repair protein RecN Machinery gene
  LIS79_RS11425 (LIS79_11430) argR 2218064..2218513 (-) 450 WP_007501163.1 transcriptional regulator ArgR -
  LIS79_RS11430 (LIS79_11435) - 2218675..2219529 (-) 855 WP_007501164.1 TlyA family RNA methyltransferase -
  LIS79_RS11435 (LIS79_11440) dxs 2219526..2221427 (-) 1902 WP_007501165.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIS79_RS11440 (LIS79_11445) - 2221579..2222469 (-) 891 WP_008342221.1 polyprenyl synthetase family protein -
  LIS79_RS11445 (LIS79_11450) - 2222459..2222719 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64571.46 Da        Isoelectric Point: 4.7444

>NTDB_id=617350 LIS79_RS11420 WP_035390783.1 2216296..2218029(-) (recN) [Bacillus altitudinis strain CMF5]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNFEKIFSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAISRDALLEALNVSELRKKWAKKLAKHIQAELKDLYMEKSSFDTAFSI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRAKAGRTMTNVKPLSDDEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=617350 LIS79_RS11420 WP_035390783.1 2216296..2218029(-) (recN) [Bacillus altitudinis strain CMF5]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAGGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCAATCATGATTGACGCTGTCTCACTTCTCGTAGGGGGAAGAGGATCATCCGAAT
TTGTCCGTTATGGTGAAAAAAAAGCAGAGCTGGAAGGTCTTTTTCTTGTACCAGCAGATCATCCTGTATTTGCTCTTTGC
GAGGAGCAAGGAATTGATGCATCTGATGAAATGATGATTCTTCGCCGTGATATCAATCAAAGCGGGAAAAGCATTTGCCG
CATTAATGGTAAGCTTGTCACCATCTCGCTTTTAAGAGAAGTTGGCCGGCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGTTAATGGAAGATGAAAATCATTTACATTTGCTTGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTCTCG
CAGTATCAAGAAGCGTATGATCAATATATGAAGACGGCGCAAAAACTCAAACAGCTGTCTGAAAATGAACAGGAAATGGT
TCACCGGTTAGACTTATTGCAATTTCAGCTGGAAGAGATTGAAGCGGCACAATTAGAGCCTGGGGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATCAGCAATTTTGAAAAAATCTTTTCCTCACTTCAAAACGCATATAATGCTCTGCGTAATGAG
CAGGGAGGACTTGATTGGGTTGGGATGGCTTCAAGCGAGCTTGAGCAAGTTTCTGAGATCAACGACGATCTGAAAAAGCT
CTCTGAGCAAGTGTCAAACTCCTATTATTTATTAGAAGATTCTACTTTTCAAATGCGCAGCATGCTTGATCAATTAGAAT
TTGACCCAGCCCGTCTTGATTTTATTGAGTCTAGACTAAATGAGATGAAGCAGCTGAAGCGAAAATACGGCACAACCGTT
GAGGAAATTTTAGAATATGCGGCTAAGATTGAAGAGGAGATAGACCAAATCCAAAATCGAGACAGCCATTTGCAGACACT
TAAAAACAAACTTGATGCGATAAGCCGGGATGCATTGCTTGAAGCGCTTAACGTGTCAGAGCTCCGTAAAAAATGGGCGA
AAAAACTGGCGAAGCACATTCAAGCTGAATTGAAGGATTTATATATGGAGAAGTCTTCTTTTGATACCGCTTTTTCGATT
CGATATGCACCTTTTGGCAGTACGGACTGCCCGCTTTTAGATGGAAAACCCGTACAGCTCGGGAAAAACGGCATAGATCA
AGCGCAATTTGTCATTTCAACAAATCCGGGTGAACCGATGAAATCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCAC
GTGTCATGCTGGCAGTGAAAAGTATTTTCTCAGCGAAACAAGAAGTGACGTCCATTATATTTGATGAAGTGGATACGGGC
GTTAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTATAAAGTCGCAGCAGGCTCACAAGTACTCTGTATTACCCA
TCTGCCGCAAGTCGCAGCAATGGCTGATACACATCTTTTTATTTCTAAACGCGCTAAAGCTGGTAGAACAATGACGAACG
TCAAACCACTCAGTGATGATGAAAAAGTGAGTGAAATTGGCCGAATGATTGCTGGTGTAGAAGTCACTGAGCTCACAAAA
CAGCATGCAAAAGAATTACTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757