Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MOP79_RS05400 Genome accession   NZ_CP102583
Coordinates   1044162..1045829 (+) Length   555 a.a.
NCBI ID   WP_000923570.1    Uniprot ID   Q8DPN3
Organism   Streptococcus pneumoniae strain D39Mega17545     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1039162..1050829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP79_RS05365 - 1039345..1039647 (+) 303 WP_000985093.1 bacteriocin immunity protein -
  MOP79_RS05370 udk 1039755..1040393 (+) 639 WP_001181378.1 uridine kinase -
  MOP79_RS05375 xseA 1040521..1041861 (+) 1341 WP_000417487.1 exodeoxyribonuclease VII large subunit -
  MOP79_RS05380 - 1041839..1042051 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  MOP79_RS05385 - 1042048..1042923 (+) 876 WP_000743818.1 polyprenyl synthetase family protein -
  MOP79_RS05390 - 1042916..1043731 (+) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  MOP79_RS05395 - 1043724..1044155 (+) 432 WP_001034412.1 arginine repressor -
  MOP79_RS05400 recN 1044162..1045829 (+) 1668 WP_000923570.1 DNA repair protein RecN Machinery gene
  MOP79_RS05405 - 1045831..1046559 (+) 729 WP_000133339.1 metallophosphoesterase family protein -
  MOP79_RS05410 lepA 1046638..1048461 (+) 1824 WP_001047216.1 translation elongation factor 4 -
  MOP79_RS05415 - 1048542..1048694 (-) 153 WP_001809697.1 hypothetical protein -
  MOP79_RS05420 - 1048875..1049350 (+) 476 Protein_1078 PTS sugar transporter subunit IIA -
  MOP79_RS05425 - 1049388..1049690 (+) 303 WP_257857447.1 PTS sugar transporter subunit IIB -
  MOP79_RS05430 - 1049698..1050500 (+) 803 WP_106269349.1 IS5 family transposase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62792.22 Da        Isoelectric Point: 4.6517

>NTDB_id=617285 MOP79_RS05400 WP_000923570.1 1044162..1045829(+) (recN) [Streptococcus pneumoniae strain D39Mega17545]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=617285 MOP79_RS05400 WP_000923570.1 1044162..1045829(+) (recN) [Streptococcus pneumoniae strain D39Mega17545]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAAGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DPN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44