Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LI754_RS03325 Genome accession   NZ_CP085320
Coordinates   666022..666558 (+) Length   178 a.a.
NCBI ID   WP_044288615.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CJFA-182     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 661022..671558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI754_RS03300 cysE 662202..662849 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  LI754_RS03305 cysS 662833..664233 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  LI754_RS03310 - 664226..664630 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LI754_RS03315 rlmB 664638..665384 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LI754_RS03320 - 665384..665908 (+) 525 WP_044288614.1 NYN domain-containing protein -
  LI754_RS03325 sigH 666022..666558 (+) 537 WP_044288615.1 sigma-70 family RNA polymerase sigma factor Regulator
  LI754_RS03330 rpmG 666673..666816 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  LI754_RS03335 secE 666872..667054 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LI754_RS03340 nusG 667067..667615 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LI754_RS03345 rplK 667796..668218 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  LI754_RS03350 rplA 668426..669118 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  LI754_RS03355 rplJ 669390..669890 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  LI754_RS03360 rplL 669933..670301 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LI754_RS03365 - 670476..671084 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 21831.59 Da        Isoelectric Point: 9.7241

>NTDB_id=617182 LI754_RS03325 WP_044288615.1 666022..666558(+) (sigH) [Staphylococcus aureus strain CJFA-182]
MKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQCLITSVKYDYLR
KYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVI
YNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 537 bp        

>NTDB_id=617182 LI754_RS03325 WP_044288615.1 666022..666558(+) (sigH) [Staphylococcus aureus strain CJFA-182]
ATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCAT
CAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAGAAATACTTATACGGATGTATAGGTCGGTCCAAA
CATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGTTTAATTACGTCTGTAAAGTATGATTATTTGAGA
AAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATATAGAGTTACGTATCCATGTGCAATAAAGCGTTA
TGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGATTCGTCAGTTTAAGTATTTGAGTGCATTTGAAA
AAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATTGCTCAACTGATGCATGTAAAAGAGAAAGTGATT
TATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAAAATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(15-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.876

100

0.989
  sigH Staphylococcus aureus N315

97.753

100

0.978