Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LI911_RS13365 Genome accession   NZ_CP085318
Coordinates   2691826..2692221 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CKFA-361     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2686826..2697221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI911_RS13335 - 2688028..2688432 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LI911_RS13340 - 2688827..2688919 (+) 93 WP_001790611.1 hypothetical protein -
  LI911_RS13345 - 2689051..2689284 (+) 234 WP_000384523.1 DUF1146 family protein -
  LI911_RS13350 murA 2689395..2690660 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LI911_RS13355 fabZ 2690694..2691134 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LI911_RS13360 - 2691192..2691632 (-) 441 WP_000846746.1 YwpF-like family protein -
  LI911_RS13365 ssb 2691826..2692221 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LI911_RS13370 sceD 2692610..2693305 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  LI911_RS13375 tenA 2693691..2694380 (+) 690 WP_000396067.1 thiaminase II -
  LI911_RS13380 thiD 2694373..2695203 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LI911_RS13385 thiM 2695187..2695978 (+) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  LI911_RS13390 thiE 2695980..2696621 (+) 642 WP_000483156.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=617172 LI911_RS13365 WP_000932694.1 2691826..2692221(+) (ssb) [Staphylococcus aureus strain CKFA-361]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=617172 LI911_RS13365 WP_000932694.1 2691826..2692221(+) (ssb) [Staphylococcus aureus strain CKFA-361]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992