Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LI911_RS07490 Genome accession   NZ_CP085318
Coordinates   1483242..1483811 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CKFA-361     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1478242..1488811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI911_RS07450 - 1478716..1479324 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  LI911_RS07455 rplL 1479499..1479867 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LI911_RS07460 rplJ 1479910..1480410 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  LI911_RS07465 rplA 1480682..1481374 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LI911_RS07470 rplK 1481582..1482004 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LI911_RS07475 nusG 1482185..1482733 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LI911_RS07480 secE 1482746..1482928 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LI911_RS07485 rpmG 1482984..1483127 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LI911_RS07490 sigH 1483242..1483811 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  LI911_RS07495 - 1483892..1484416 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LI911_RS07500 rlmB 1484416..1485162 (-) 747 WP_323147677.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LI911_RS07505 - 1485170..1485574 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LI911_RS07510 cysS 1485567..1486967 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  LI911_RS07515 cysE 1486951..1487598 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=617160 LI911_RS07490 WP_000872876.1 1483242..1483811(-) (sigH) [Staphylococcus aureus strain CKFA-361]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=617160 LI911_RS07490 WP_000872876.1 1483242..1483811(-) (sigH) [Staphylococcus aureus strain CKFA-361]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984