Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LI911_RS05545 Genome accession   NZ_CP085318
Coordinates   1087217..1088203 (-) Length   328 a.a.
NCBI ID   WP_000959288.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CKFA-361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1082217..1093203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI911_RS05520 - 1082477..1082824 (-) 348 WP_001242102.1 hypothetical protein -
  LI911_RS05525 - 1083010..1083603 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  LI911_RS05530 - 1083707..1084072 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  LI911_RS05535 yjbH 1084095..1084901 (+) 807 WP_000896696.1 protease adaptor protein YjbH -
  LI911_RS05540 pepF 1085361..1087169 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  LI911_RS05545 coiA 1087217..1088203 (-) 987 WP_000959288.1 competence protein CoiA Machinery gene
  LI911_RS05550 mecA 1088324..1089043 (-) 720 WP_001217728.1 adaptor protein MecA -
  LI911_RS05555 spxA 1089415..1089810 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  LI911_RS05560 trpS 1090105..1091094 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  LI911_RS05565 opp4C 1091136..1092017 (-) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  LI911_RS05570 opp4B 1092029..1092991 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38899.50 Da        Isoelectric Point: 9.5881

>NTDB_id=617155 LI911_RS05545 WP_000959288.1 1087217..1088203(-) (coiA) [Staphylococcus aureus strain CKFA-361]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFTINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=617155 LI911_RS05545 WP_000959288.1 1087217..1088203(-) (coiA) [Staphylococcus aureus strain CKFA-361]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCA
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982