Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LIT96_RS06615 Genome accession   NZ_CP085291
Coordinates   1340989..1341555 (-) Length   188 a.a.
NCBI ID   WP_002364599.1    Uniprot ID   A0A1B4XKB5
Organism   Enterococcus faecalis strain EFS36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1335989..1346555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT96_RS06595 (LIT96_06595) dnaB 1336444..1337811 (-) 1368 WP_002381331.1 replicative DNA helicase -
  LIT96_RS06600 (LIT96_06600) rplI 1338085..1338537 (-) 453 WP_002356023.1 50S ribosomal protein L9 -
  LIT96_RS06605 (LIT96_06605) - 1338543..1340567 (-) 2025 WP_227316557.1 DHH family phosphoesterase -
  LIT96_RS06610 (LIT96_06610) rpsR 1340724..1340963 (-) 240 WP_002356021.1 30S ribosomal protein S18 -
  LIT96_RS06615 (LIT96_06615) ssb 1340989..1341555 (-) 567 WP_002364599.1 single-stranded DNA-binding protein Machinery gene
  LIT96_RS06620 (LIT96_06620) rpsF 1341600..1341902 (-) 303 WP_002356019.1 30S ribosomal protein S6 -
  LIT96_RS06625 (LIT96_06625) gyrA 1342077..1344578 (-) 2502 WP_002361457.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20574.18 Da        Isoelectric Point: 4.6010

>NTDB_id=617064 LIT96_RS06615 WP_002364599.1 1340989..1341555(-) (ssb) [Enterococcus faecalis strain EFS36]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=617064 LIT96_RS06615 WP_002364599.1 1340989..1341555(-) (ssb) [Enterococcus faecalis strain EFS36]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B4XKB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.638

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.85

100

0.543