Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LJA38_RS14675 Genome accession   NZ_CP085283
Coordinates   3024302..3024946 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain TPS3N     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3019302..3029946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS14640 - 3020487..3020918 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  LJA38_RS14645 - 3020918..3021259 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  LJA38_RS14650 - 3021252..3022733 (+) 1482 WP_014305717.1 Na+/H+ antiporter subunit D -
  LJA38_RS14655 - 3022739..3023215 (+) 477 WP_063174636.1 Na+/H+ antiporter subunit E -
  LJA38_RS14660 - 3023215..3023499 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  LJA38_RS14665 mnhG 3023483..3023857 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  LJA38_RS14670 - 3023897..3024280 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  LJA38_RS14675 comA 3024302..3024946 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  LJA38_RS14680 comP 3025027..3027318 (-) 2292 WP_101312053.1 histidine kinase Regulator
  LJA38_RS14685 comX 3027330..3027494 (-) 165 WP_007613432.1 competence pheromone ComX -
  LJA38_RS14690 - 3027494..3028372 (-) 879 WP_024085740.1 polyprenyl synthetase family protein -
  LJA38_RS14695 degQ 3028557..3028697 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LJA38_RS14700 - 3029163..3029504 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=616994 LJA38_RS14675 WP_003152052.1 3024302..3024946(-) (comA) [Bacillus velezensis strain TPS3N]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=616994 LJA38_RS14675 WP_003152052.1 3024302..3024946(-) (comA) [Bacillus velezensis strain TPS3N]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864