Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LJA38_RS01790 Genome accession   NZ_CP085283
Coordinates   360083..360520 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain TPS3N     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 355083..365520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS01750 - 355663..355824 (-) 162 Protein_304 hypothetical protein -
  LJA38_RS01755 - 355941..357143 (+) 1203 WP_015388720.1 GTP-binding protein -
  LJA38_RS01760 - 357208..358344 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  LJA38_RS01765 - 358359..358793 (+) 435 WP_057080003.1 RDD family protein -
  LJA38_RS01770 - 358865..359185 (+) 321 WP_015388719.1 YckD family protein -
  LJA38_RS01775 - 359289..359405 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  LJA38_RS01780 - 359404..359622 (+) 219 Protein_310 family 1 glycosylhydrolase -
  LJA38_RS01785 nin/comJ 359663..360061 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  LJA38_RS01790 nucA/comI 360083..360520 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LJA38_RS01795 hxlB 360879..361436 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  LJA38_RS01800 hxlA 361433..362068 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  LJA38_RS01805 - 362300..362662 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=616942 LJA38_RS01790 WP_003156588.1 360083..360520(-) (nucA/comI) [Bacillus velezensis strain TPS3N]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=616942 LJA38_RS01790 WP_003156588.1 360083..360520(-) (nucA/comI) [Bacillus velezensis strain TPS3N]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641