Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   LJA38_RS01785 Genome accession   NZ_CP085283
Coordinates   359663..360061 (-) Length   132 a.a.
NCBI ID   WP_014304317.1    Uniprot ID   -
Organism   Bacillus velezensis strain TPS3N     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 354663..365061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS01750 - 355663..355824 (-) 162 Protein_304 hypothetical protein -
  LJA38_RS01755 - 355941..357143 (+) 1203 WP_015388720.1 GTP-binding protein -
  LJA38_RS01760 - 357208..358344 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  LJA38_RS01765 - 358359..358793 (+) 435 WP_057080003.1 RDD family protein -
  LJA38_RS01770 - 358865..359185 (+) 321 WP_015388719.1 YckD family protein -
  LJA38_RS01775 - 359289..359405 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  LJA38_RS01780 - 359404..359622 (+) 219 Protein_310 family 1 glycosylhydrolase -
  LJA38_RS01785 nin/comJ 359663..360061 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  LJA38_RS01790 nucA/comI 360083..360520 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LJA38_RS01795 hxlB 360879..361436 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  LJA38_RS01800 hxlA 361433..362068 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  LJA38_RS01805 - 362300..362662 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15049.01 Da        Isoelectric Point: 4.6564

>NTDB_id=616941 LJA38_RS01785 WP_014304317.1 359663..360061(-) (nin/comJ) [Bacillus velezensis strain TPS3N]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVFRLNTSEPVLSYEKKATVPF
EAVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=616941 LJA38_RS01785 WP_014304317.1 359663..360061(-) (nin/comJ) [Bacillus velezensis strain TPS3N]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCGTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCTTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

77.519

97.727

0.758