Detailed information NTG0616916

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: JIX55_RS18305
• Genome accession: NZ_CP102513
• Coordinates: 4094088..4095374 (-)
• Length: 428 a.a.
• NCBI ID: WP_257569372.1
• Uniprot ID: -
• Organism: Streptomyces sp. DSM 40750
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4089088..4100374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JIX55_RS18295 (JIX55_18295)	-	4090096..4092720 (-)	2625	WP_257564382.1	valine--tRNA ligase	-
JIX55_RS18300 (JIX55_18300)	-	4092858..4093823 (+)	966	WP_257564383.1	hypothetical protein	-
JIX55_RS18305 (JIX55_18305)	clpX	4094088..4095374 (-)	1287	WP_257569372.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
JIX55_RS18310 (JIX55_18310)	clpP	4095579..4096259 (-)	681	WP_306820017.1	ATP-dependent Clp protease proteolytic subunit	Regulator
JIX55_RS18315 (JIX55_18315)	clpP	4096402..4097010 (-)	609	WP_257551227.1	ATP-dependent Clp protease proteolytic subunit	Regulator
JIX55_RS18320 (JIX55_18320)	tig	4097411..4098811 (-)	1401	WP_257564384.1	trigger factor	-
JIX55_RS18335 (JIX55_18335)	-	4099449..4099643 (-)	195	WP_028796974.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46805.69 Da
• Isoelectric Point: 4.7788

>NTDB_id=616916 JIX55_RS18305 WP_257569372.1 4094088..4095374(-) (clpX) [Streptomyces sp. DSM 40750]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKRELESKDQFEAVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQAVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=616916 JIX55_RS18305 WP_257569372.1 4094088..4095374(-) (clpX) [Streptomyces sp. DSM 40750]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAGCTCGCGGAGACCA
GCGAGGTCCGCTGGGAGGAACTCCCGAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGCTATGTGGTCGGCCAGGAGCCG
GCCAAGAAGGCCCTCTCCGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACGGCGGCGCCCAAGGCCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTGCTGCTCGGCCCGACCGGCTCCGGAAAGACGCTGCTGGCCCAGA
CGCTGGCCCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCGGGCTATGTGGGCGAGGAC
GTCGAGAACATCCTCCTCAAGCTCATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
TGAGATCGACAAGGTCGCGAGGAAGAGTGAAAACCCCTCCATCACGCGCGACGTGTCGGGCGAGGGCGTCCAGCAGGCCC
TGTTGAAGATCCTGGAGGGCACCACGGCCTCCGTCCCGCCCCAGGGCGGCCGGAAGCACCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCCTTCGCGGGCCTGGAGAAGATCATCGAGTCCCGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCCACGATCCGCTCCAAGCGCGAGCTGGAGTCCAAGGACCAGTTCGAGGCCGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGCCTCCCGGTCATCACCTCCGTCCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCCCGCAACGCCCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAAGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAAGAGGTCCTCCAGGCGGTCATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACA
GCGGACGTCGTCCTCTCGAACGTCAACCCGACGCTCATTCCTCGCGACGCGCGGGGGCGGGGGCCGGGGGAGCAGAAGAC
GGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.935	93.925	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.501	96.028	0.523