Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LG333_RS06790 Genome accession   NZ_CP085270
Coordinates   1297077..1298030 (+) Length   317 a.a.
NCBI ID   WP_404470033.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-536     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292077..1303030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG333_RS06765 (LG333_06720) clpB 1292104..1294698 (+) 2595 WP_404470030.1 ATP-dependent chaperone ClpB -
  LG333_RS06770 (LG333_06725) - 1294754..1294936 (-) 183 WP_010192034.1 YjzD family protein -
  LG333_RS06775 (LG333_06730) - 1295051..1295188 (+) 138 WP_223492772.1 hypothetical protein -
  LG333_RS06780 (LG333_06735) - 1295333..1296073 (+) 741 WP_404470031.1 hypothetical protein -
  LG333_RS06785 (LG333_06740) - 1296165..1296935 (+) 771 WP_404470032.1 hypothetical protein -
  LG333_RS06790 (LG333_06745) med 1297077..1298030 (+) 954 WP_404470033.1 BMP family ABC transporter substrate-binding protein Regulator
  LG333_RS06795 (LG333_06750) comZ 1298046..1298234 (+) 189 WP_047971098.1 ComZ family protein Regulator
  LG333_RS06800 (LG333_06755) - 1298295..1298537 (-) 243 WP_404470034.1 hypothetical protein -
  LG333_RS06805 (LG333_06760) - 1298888..1299820 (+) 933 WP_404350679.1 beta-ketoacyl-ACP synthase III -
  LG333_RS06810 (LG333_06765) fabF 1299869..1301107 (+) 1239 WP_223493599.1 beta-ketoacyl-ACP synthase II -
  LG333_RS06815 (LG333_06770) - 1301230..1302012 (+) 783 WP_223492780.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35141.39 Da        Isoelectric Point: 4.0957

>NTDB_id=616751 LG333_RS06790 WP_404470033.1 1297077..1298030(+) (med) [Sutcliffiella horikoshii strain ABH-536]
MKKSLMVIILFILLLTACGQTTPESGDQKVGLLVPDTISDQVWGTKGYKGLLRIQTEYDLDVYYKEGIHTDTSIKEAVKE
FHKDGVTLVFGHGSEYAQTFNEISSDYPDIHFVCFNSQVQGDNVTSLNFEAHAMGFFGGMVAGHMTETNTIGILAAFEWQ
PEVDGFFEGALHENPDAKIIIKYTQDWNDPDKALEVLDDMIAQEVDVVYPAGDGYNVPVINSLKEQGLYAVGFVSDQSDL
GENTVLTSTIQHVPALYELVASRFFAGELESGNLSFDFKDDVISLGTFSPLVSKEYQENIIQQIEDYKSTGLLPNEK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=616751 LG333_RS06790 WP_404470033.1 1297077..1298030(+) (med) [Sutcliffiella horikoshii strain ABH-536]
ATGAAAAAATCATTAATGGTAATCATACTATTTATTCTTTTATTAACTGCATGTGGACAAACTACTCCTGAAAGCGGAGA
TCAAAAGGTCGGCTTGTTGGTCCCTGATACGATAAGTGATCAGGTATGGGGAACAAAAGGCTATAAAGGGCTGTTGCGGA
TTCAAACGGAATATGACCTAGATGTATATTATAAAGAAGGCATACATACTGATACATCGATTAAAGAAGCGGTGAAAGAG
TTTCATAAAGACGGAGTTACCTTGGTATTTGGGCACGGCAGCGAATATGCGCAAACATTTAATGAGATATCATCTGATTA
TCCAGACATTCATTTTGTATGTTTTAATTCACAAGTTCAAGGTGATAATGTAACAAGCTTGAATTTTGAAGCACATGCCA
TGGGCTTTTTCGGTGGGATGGTAGCTGGTCATATGACGGAGACTAATACTATCGGAATTTTAGCCGCATTTGAATGGCAG
CCTGAAGTGGACGGATTCTTCGAAGGGGCATTACATGAAAATCCTGATGCTAAAATTATAATAAAGTACACGCAAGACTG
GAATGATCCTGATAAGGCATTGGAAGTGCTTGATGATATGATCGCTCAAGAGGTGGATGTTGTGTATCCTGCTGGTGATG
GATATAATGTTCCTGTCATCAATAGCTTAAAGGAACAGGGTCTATATGCGGTAGGCTTCGTCTCTGATCAGTCAGACTTA
GGGGAGAATACTGTACTTACCAGCACCATTCAGCATGTCCCTGCCTTGTACGAACTGGTGGCTAGTCGTTTCTTTGCAGG
GGAATTAGAATCTGGTAACCTTTCCTTTGATTTTAAAGATGATGTCATTTCACTTGGGACATTCAGTCCGCTAGTAAGCA
AGGAATACCAGGAAAACATTATTCAACAAATTGAGGATTATAAGTCCACCGGATTATTACCAAACGAAAAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

54.459

99.054

0.539