Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   JIW86_RS22795 Genome accession   NZ_CP102509
Coordinates   4879632..4881032 (-) Length   466 a.a.
NCBI ID   WP_257555686.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00162     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4874632..4886032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIW86_RS22765 (JIW86_22765) - 4874900..4875460 (-) 561 WP_215147851.1 SigE family RNA polymerase sigma factor -
  JIW86_RS41455 - 4875656..4876558 (-) 903 WP_263862069.1 A/G-specific adenine glycosylase -
  JIW86_RS22780 (JIW86_22780) - 4876601..4877209 (-) 609 WP_257555684.1 phosphatase PAP2 family protein -
  JIW86_RS22785 (JIW86_22785) - 4877369..4878163 (+) 795 WP_257555685.1 hypothetical protein -
  JIW86_RS22790 (JIW86_22790) disA 4878369..4879493 (-) 1125 WP_215147836.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  JIW86_RS22795 (JIW86_22795) radA/sms 4879632..4881032 (-) 1401 WP_257555686.1 DNA repair protein RadA Machinery gene
  JIW86_RS22800 (JIW86_22800) - 4881191..4882918 (+) 1728 WP_257555687.1 BACON domain-containing protein -
  JIW86_RS22805 (JIW86_22805) - 4882915..4883832 (-) 918 WP_257555688.1 hypothetical protein -
  JIW86_RS22810 (JIW86_22810) - 4883896..4884834 (+) 939 WP_257555689.1 Ppx/GppA phosphatase family protein -
  JIW86_RS22815 (JIW86_22815) - 4884960..4885793 (+) 834 WP_257555690.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 48754.85 Da        Isoelectric Point: 8.0042

>NTDB_id=616749 JIW86_RS22795 WP_257555686.1 4879632..4881032(-) (radA/sms) [Streptomyces sp. NBC_00162]
MAARTARSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAAVPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSA
VLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVTEVADMGDALRVLPRGRSRAAAKE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=616749 JIW86_RS22795 WP_257555686.1 4879632..4881032(-) (radA/sms) [Streptomyces sp. NBC_00162]
ATGGCTGCCCGCACTGCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGTACCGAGTGCGGCTGGACGACCGCGAA
GTGGCTCGGGCGGTGTCCCGAGTGCCAGGCGTGGGGCACCGTCGAGGAGATGGGCGCACCCGCCGTGCGGACCACCGCCG
CAGGCCGGGTGTCGACCGCCGCGGTGCCGATCGCGCAGGTCGACGGCCGGACGGCGACCGCGCGCAGCACCGGCGTGGAC
GAGCTGGACCGGGTCCTCGGCGGCGGGCTCGTGCCCGGCGCCGTGGTGCTGCTCGCCGGGGAGCCCGGCGTCGGGAAGTC
GACGCTGCTGCTCGACGTCGCGGCGAAGGCGGCCAGCGACGAGCACCGCACGCTGTACGTCACGGGCGAGGAGTCGGCGA
GCCAGGTGCGGCTGCGCGCCGACCGGATCAACGCGCTGAGCGACCACCTCTACCTGGCGGCCGAGACCGACCTCTCCGCC
GTGCTCGGGCACCTGGACGCGGTGAAGCCCTCCCTCCTCATCCTGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGGGCCCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCA
CACTCCTCGTGGGCCACGTGACCAAGGACGGGGCCATCGCCGGACCCCGCCTCCTGGAACACCTCGTCGACGTGGTGCTG
AGCTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTCGTGCGCGGCGTCAAGAACCGGTACGGGGCCACCGACGAGGTGGG
CTGCTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCCGAGGCCG
TGCCCGGGACCTGCCTGACGGTGACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCG
CAGATCCCCTCCCCCCGGCGCACCACGTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACCGCGCTGGGCAAGCGGGACATCTACAGCGCCACCGTGGGCGGGGTGAAGCTGACCGAGCCGGCCGCCG
ACCTGGCCATCGCCCTGGCCCTGGCCTCCGCCGCCAGCGACGTCCCGCTCCCGAAGAACCTCGTGGCCATCGGGGAGGTC
GGCCTGGCCGGCGAGGTGCGCCGGGTGACCGGCGTACAGCGGCGGCTCGCGGAGGCGCACCGGCTCGGTTTCACGCACGC
CCTGGTGCCGTCGGATCCGGGCAAGGTACCGGCCGGGATGAAGGTGACCGAGGTCGCCGACATGGGCGACGCCCTGCGGG
TCCTGCCGCGCGGGCGGTCCCGTGCGGCGGCCAAGGAGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(84-224)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

97.21

0.427
  radA Streptococcus pneumoniae Rx1

44.393

91.845

0.408
  radA Streptococcus pneumoniae D39

44.393

91.845

0.408
  radA Streptococcus pneumoniae R6

44.393

91.845

0.408
  radA Streptococcus pneumoniae TIGR4

44.393

91.845

0.408
  radA Streptococcus mitis SK321

44.393

91.845

0.408
  radA Streptococcus mitis NCTC 12261

44.393

91.845

0.408