Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   JIW86_RS22030 Genome accession   NZ_CP102509
Coordinates   4716218..4716817 (+) Length   199 a.a.
NCBI ID   WP_215143307.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00162     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4711218..4721817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIW86_RS22005 (JIW86_22005) - 4711788..4713149 (+) 1362 WP_257555581.1 aspartate aminotransferase family protein -
  JIW86_RS22010 (JIW86_22010) - 4713246..4713914 (+) 669 WP_215143301.1 GntR family transcriptional regulator -
  JIW86_RS22015 (JIW86_22015) - 4714078..4714728 (+) 651 WP_136217620.1 hypothetical protein -
  JIW86_RS22020 (JIW86_22020) - 4714835..4715581 (-) 747 WP_215143303.1 SLATT domain-containing protein -
  JIW86_RS22025 (JIW86_22025) - 4715837..4716181 (+) 345 WP_215143305.1 YbaB/EbfC family nucleoid-associated protein -
  JIW86_RS22030 (JIW86_22030) recR 4716218..4716817 (+) 600 WP_215143307.1 recombination mediator RecR Machinery gene
  JIW86_RS22035 (JIW86_22035) - 4716810..4717457 (+) 648 WP_215143309.1 DUF5063 domain-containing protein -
  JIW86_RS22040 (JIW86_22040) - 4717650..4718924 (+) 1275 WP_215143311.1 aspartate kinase -
  JIW86_RS22045 (JIW86_22045) - 4718921..4719994 (+) 1074 WP_257555582.1 aspartate-semialdehyde dehydrogenase -
  JIW86_RS22050 (JIW86_22050) - 4720215..4720946 (+) 732 WP_257559389.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21859.18 Da        Isoelectric Point: 5.0142

>NTDB_id=616744 JIW86_RS22030 WP_215143307.1 4716218..4716817(+) (recR) [Streptomyces sp. NBC_00162]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCGICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLSRLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=616744 JIW86_RS22030 WP_215143307.1 4716218..4716817(+) (recR) [Streptomyces sp. NBC_00162]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCATGCGCTGCTCGAGGTGAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCGGCATCTGCCGCGACCCGCGCCGCGACACCACGGTC
ATCTGTGTCGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACGCGTGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGATGACCTGCGGATCCGCGAGCTGCTGTCGCGCCTCGCGGACGGCG
AGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472