Detailed information
Bioinformatically predicted
Overview
| Name | clpX | Type | Regulator |
| Locus tag | SANR_RS03980 | Genome accession | NC_022239 |
| Coordinates | 795740..796972 (+) | Length | 410 a.a. |
| NCBI ID | WP_003027977.1 | Uniprot ID | I0SHV1 |
| Organism | Streptococcus anginosus C238 | ||
| Function | require for competence development (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 785393..818030 | 795740..796972 | within | 0 |
Gene organization within MGE regions
Location: 785393..818030
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SANR_RS03905 (SANR_0763) | - | 785475..785732 (-) | 258 | WP_003024959.1 | metal-sensitive transcriptional regulator | - |
| SANR_RS03910 (SANR_0764) | - | 785906..786346 (+) | 441 | WP_020999552.1 | hypothetical protein | - |
| SANR_RS03915 (SANR_0765) | - | 786507..787415 (+) | 909 | WP_003034976.1 | LysR family transcriptional regulator | - |
| SANR_RS03920 (SANR_0766) | lspA | 787412..787873 (+) | 462 | WP_003032263.1 | signal peptidase II | - |
| SANR_RS03925 (SANR_0767) | - | 787863..788759 (+) | 897 | WP_003035060.1 | RluA family pseudouridine synthase | - |
| SANR_RS03930 (SANR_0768) | - | 788907..789248 (+) | 342 | WP_267471890.1 | glutamate 5-kinase | - |
| SANR_RS03935 (SANR_0769) | - | 789293..790261 (+) | 969 | WP_003035041.1 | aminoglycoside phosphotransferase family protein | - |
| SANR_RS03940 (SANR_0770) | - | 790346..790687 (+) | 342 | WP_003035020.1 | zinc ribbon domain-containing protein YjdM | - |
| SANR_RS03945 (SANR_0771) | - | 790695..791330 (+) | 636 | WP_003035071.1 | Pr6Pr family membrane protein | - |
| SANR_RS03950 (SANR_0772) | - | 791528..792370 (+) | 843 | WP_003034933.1 | hypothetical protein | - |
| SANR_RS03955 (SANR_0773) | - | 792409..792672 (+) | 264 | WP_003035068.1 | chorismate mutase | - |
| SANR_RS03960 (SANR_0774) | - | 792688..793905 (+) | 1218 | WP_003034942.1 | voltage-gated chloride channel family protein | - |
| SANR_RS03965 (SANR_0775) | - | 793991..794830 (+) | 840 | WP_003034902.1 | thymidylate synthase | - |
| SANR_RS03970 (SANR_0776) | - | 795017..795529 (+) | 513 | WP_003035097.1 | dihydrofolate reductase | - |
| SANR_RS11675 (SANR_0777) | - | 795529..795702 (+) | 174 | WP_003035049.1 | hypothetical protein | - |
| SANR_RS03980 (SANR_0778) | clpX | 795740..796972 (+) | 1233 | WP_003027977.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | Regulator |
| SANR_RS03985 (SANR_0779) | yihA | 796984..797571 (+) | 588 | WP_003035043.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| SANR_RS03990 (SANR_0780) | - | 797692..798399 (+) | 708 | WP_003035004.1 | glucosaminidase domain-containing protein | - |
| SANR_RS03995 (SANR_0781) | - | 798636..799499 (+) | 864 | WP_003033304.1 | IS982 family transposase | - |
| SANR_RS04000 (SANR_0782) | - | 799510..801183 (+) | 1674 | WP_003033502.1 | FtsK/SpoIIIE domain-containing protein | - |
| SANR_RS04005 (SANR_0783) | - | 801466..802707 (+) | 1242 | WP_003033496.1 | replication initiation factor domain-containing protein | - |
| SANR_RS04010 (SANR_0784) | - | 802686..803075 (+) | 390 | WP_003033500.1 | hypothetical protein | - |
| SANR_RS04015 | - | 803171..803461 (+) | 291 | WP_003033498.1 | hypothetical protein | - |
| SANR_RS04020 (SANR_0785) | - | 803594..804529 (+) | 936 | WP_020999554.1 | IS30 family transposase | - |
| SANR_RS04025 (SANR_0786) | - | 804533..805672 (+) | 1140 | WP_003037865.1 | recombinase family protein | - |
| SANR_RS04030 (SANR_0787) | - | 805617..806924 (+) | 1308 | WP_080572008.1 | recombinase family protein | - |
| SANR_RS04035 (SANR_0788) | - | 807232..808578 (+) | 1347 | WP_041791103.1 | DUF349 domain-containing protein | - |
| SANR_RS04040 (SANR_0789) | - | 809314..810492 (+) | 1179 | WP_020999557.1 | hypothetical protein | - |
| SANR_RS04045 (SANR_0790) | - | 810794..811930 (+) | 1137 | WP_003037968.1 | helix-turn-helix domain-containing protein | - |
| SANR_RS04050 (SANR_0791) | - | 812438..814129 (+) | 1692 | WP_003037946.1 | phospho-sugar mutase | - |
| SANR_RS04055 (SANR_0792) | - | 814311..815279 (-) | 969 | WP_003037832.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| SANR_RS04060 (SANR_0793) | - | 815406..817949 (+) | 2544 | WP_003037854.1 | M1 family metallopeptidase | - |
Sequence
Protein
Download Length: 410 a.a. Molecular weight: 45688.21 Da Isoelectric Point: 4.4242
>NTDB_id=61673 SANR_RS03980 WP_003027977.1 795740..796972(+) (clpX) [Streptococcus anginosus C238]
MPTNRTNEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREDEEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDETGSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVDDLVR
ILREPKNALVKQYQTLLSYDDVKLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA
MPTNRTNEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREDEEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDETGSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVDDLVR
ILREPKNALVKQYQTLLSYDDVKLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA
Nucleotide
Download Length: 1233 bp
>NTDB_id=61673 SANR_RS03980 WP_003027977.1 795740..796972(+) (clpX) [Streptococcus anginosus C238]
ATGCCTACAAATCGTACGAACGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGCCAAGAAGAAGTTCAAAAAATTAT
CGCAGGAAATAATGCCTTTATTTGTAATGAATGTGTGGAATTAGCACAAGAAATTATTAGAGAAGAATTAGCAGAAGAAG
TGCTGGCAGACTTGTCAGAAGTACCAAAACCGCAAGAACTACTCAATATTTTGAATCATTATGTGATTGGACAAGACCGT
GCTAAGCGAGCATTGGCCGTTGCTGTTTACAATCACTATAAACGCATCAATTTTCATGATAATCGTGAAGATGAGGAAGA
TGTCGAATTGCAGAAATCCAATATCCTCATGATTGGACCAACTGGTTCTGGCAAGACCTTTCTCGCTCAAACCTTGGCGA
AAAGTCTGAATGTTCCTTTTGCGATTGCAGACGCGACAGCTTTGACAGAAGCTGGGTATGTCGGAGAAGATGTTGAAAAT
ATTCTCTTGAAACTCTTGCAAGCAGCAGATTTCAATATTGAGCGTGCAGAACGTGGTATCATCTATGTAGATGAGATTGA
CAAAATTGCGAAGAAAAGCGAAAATGTCTCTATTACTCGCGATGTGTCTGGTGAAGGCGTTCAGCAAGCGCTTCTAAAAA
TCATTGAAGGAACTGTTGCCAGCGTACCTCCGCAAGGCGGCCGCAAGCACCCTCAACAAGAAATGATTCAAGTAGATACG
AAAAATATCCTCTTTATCGTTGGAGGAGCTTTCGACGGTATCGAAGAAATTGTTAAACAACGTCTAGGCGAAAAAATTAT
CGGTTTTGGTCAAAATAATAAAGCCATTGATGAAACTGGTTCTTATATGCAAGAAATCATCTCTGAAGATATTCAAAAAT
TTGGCTTGATTCCGGAATTGATTGGTCGTTTGCCTGTGTTTGCAGCGCTTGAGCCTTTGACAGTTGATGATTTGGTGCGA
ATCCTGCGCGAACCAAAGAATGCTTTAGTGAAGCAATATCAGACTCTCCTTTCTTATGATGATGTTAAACTAGAGTTTGA
TGATGATGCTCTTCAGGAAATTGCTAACAAGGCCATTGAACGCAAGACAGGTGCGCGTGGATTGCGGTCGATTATCGAGG
AAACTATGATGGATGTCATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAGTTAGTGCGGATTACCAAGGAAGCAGTTGAC
GGAACGGATAAGCCGATTTTAGAAACAGCATAA
ATGCCTACAAATCGTACGAACGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGCCAAGAAGAAGTTCAAAAAATTAT
CGCAGGAAATAATGCCTTTATTTGTAATGAATGTGTGGAATTAGCACAAGAAATTATTAGAGAAGAATTAGCAGAAGAAG
TGCTGGCAGACTTGTCAGAAGTACCAAAACCGCAAGAACTACTCAATATTTTGAATCATTATGTGATTGGACAAGACCGT
GCTAAGCGAGCATTGGCCGTTGCTGTTTACAATCACTATAAACGCATCAATTTTCATGATAATCGTGAAGATGAGGAAGA
TGTCGAATTGCAGAAATCCAATATCCTCATGATTGGACCAACTGGTTCTGGCAAGACCTTTCTCGCTCAAACCTTGGCGA
AAAGTCTGAATGTTCCTTTTGCGATTGCAGACGCGACAGCTTTGACAGAAGCTGGGTATGTCGGAGAAGATGTTGAAAAT
ATTCTCTTGAAACTCTTGCAAGCAGCAGATTTCAATATTGAGCGTGCAGAACGTGGTATCATCTATGTAGATGAGATTGA
CAAAATTGCGAAGAAAAGCGAAAATGTCTCTATTACTCGCGATGTGTCTGGTGAAGGCGTTCAGCAAGCGCTTCTAAAAA
TCATTGAAGGAACTGTTGCCAGCGTACCTCCGCAAGGCGGCCGCAAGCACCCTCAACAAGAAATGATTCAAGTAGATACG
AAAAATATCCTCTTTATCGTTGGAGGAGCTTTCGACGGTATCGAAGAAATTGTTAAACAACGTCTAGGCGAAAAAATTAT
CGGTTTTGGTCAAAATAATAAAGCCATTGATGAAACTGGTTCTTATATGCAAGAAATCATCTCTGAAGATATTCAAAAAT
TTGGCTTGATTCCGGAATTGATTGGTCGTTTGCCTGTGTTTGCAGCGCTTGAGCCTTTGACAGTTGATGATTTGGTGCGA
ATCCTGCGCGAACCAAAGAATGCTTTAGTGAAGCAATATCAGACTCTCCTTTCTTATGATGATGTTAAACTAGAGTTTGA
TGATGATGCTCTTCAGGAAATTGCTAACAAGGCCATTGAACGCAAGACAGGTGCGCGTGGATTGCGGTCGATTATCGAGG
AAACTATGATGGATGTCATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAGTTAGTGCGGATTACCAAGGAAGCAGTTGAC
GGAACGGATAAGCCGATTTTAGAAACAGCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpX | Streptococcus mutans UA159 |
86.829 |
100 |
0.868 |
| clpX | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
58.458 |
98.049 |
0.573 |