Detailed information NTG0616486

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: NR793_RS19085
• Genome accession: NZ_CP102434
• Coordinates: 2309716..2310996 (-)
• Length: 426 a.a.
• NCBI ID: WP_005460618.1
• Uniprot ID: Q87R79
• Organism: Vibrio parahaemolyticus strain RMDVP1
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2304716..2315996

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NR793_RS19075 (NR793_19105)	-	2306768..2307040 (-)	273	WP_005382341.1	HU family DNA-binding protein	-
NR793_RS19080 (NR793_19110)	lon	2307233..2309584 (-)	2352	WP_005493728.1	endopeptidase La	-
NR793_RS19085 (NR793_19115)	clpX	2309716..2310996 (-)	1281	WP_005460618.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
NR793_RS19090 (NR793_19120)	clpP	2311068..2311694 (-)	627	WP_005460620.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
NR793_RS19095 (NR793_19125)	tig	2311800..2313104 (-)	1305	WP_005460612.1	trigger factor	-
NR793_RS19100 (NR793_19130)	-	2313398..2313583 (-)	186	WP_005482581.1	hypothetical protein	-
NR793_RS19105 (NR793_19135)	-	2313630..2315432 (+)	1803	WP_005482580.1	ATP-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46693.23 Da
• Isoelectric Point: 4.5914

>NTDB_id=616486 NR793_RS19085 WP_005460618.1 2309716..2310996(-) (clpX) [Vibrio parahaemolyticus strain RMDVP1]
MTDKSKESGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKKESEALPTPKQIREHLDDYVI
GQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTTTLTELD
EEALIQILCEPKNALTKQYAALFELENAELEFREDALRAIAKKAMERKTGARGLRSILESVLLETMYELPSATDVSKVVI
DESVINGESEPLLIYSNADNQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=616486 NR793_RS19085 WP_005460618.1 2309716..2310996(-) (clpX) [Vibrio parahaemolyticus strain RMDVP1]
ATGACAGATAAAAGCAAAGAAAGTGGCAGCGGTAAATTGCTGTACTGTTCTTTCTGCGGCAAAAGTCAGCACGAAGTTCG
CAAGCTAATCGCAGGTCCGTCAGTTTACATTTGCGACGAGTGTGTCGACCTATGTAACGATATTATTCGCGAAGAAATCA
AGGATGTTCTCCCTAAGAAAGAATCTGAAGCGTTACCAACGCCAAAACAGATCCGTGAACACCTTGACGACTATGTGATC
GGACAAGATTACGCGAAAAAAGTGCTCGCAGTTGCGGTATATAACCACTACAAGCGTTTACGCAATGGTGATACAACGAG
CGAAGGTGTGGAGCTTGGTAAAAGTAACATCCTTCTAATTGGTCCTACAGGTAGTGGTAAAACGCTGCTTGCTGAGACTC
TAGCTCGATTCTTGGATGTGCCATTCACAATGGCAGACGCAACCACACTAACCGAAGCTGGTTATGTGGGTGAAGACGTT
GAAAACATCATCCAAAAGCTTCTGCAAAAATGTGATTACGATGTAGCGAAGGCTGAACGCGGCATTGTTTACATTGACGA
AATTGACAAAATTTCTCGCAAAGCTGAAAACCCATCAATTACGCGTGACGTATCTGGTGAAGGTGTTCAGCAAGCGCTAT
TGAAACTTATCGAAGGTACGGTTGCTTCAGTTCCACCTCAAGGTGGTCGTAAGCATCCACAGCAAGAATTCCTACAAGTG
GACACGTCTAAGATTCTGTTCATCTGTGGTGGTGCATTTGCTGGTTTAGATAAAGTTATCGAACAGCGTGTAGCTACGGG
TACTGGTATCGGCTTTGGTGCAGAAGTGCGCTCGAAGAACGAAACCAAAACCGTCGGCGAACTGTTTACTCAGGTTGAGC
CAGAAGATCTAGTGAAGTATGGTTTGATTCCAGAATTCATTGGTCGTCTTCCTGTGACAACAACACTGACAGAGCTTGAT
GAAGAAGCGTTGATTCAGATCCTATGTGAACCGAAAAACGCACTGACCAAGCAGTATGCAGCATTGTTTGAGCTAGAAAA
CGCAGAGCTTGAATTCCGTGAAGATGCCCTTCGTGCGATCGCGAAGAAAGCAATGGAACGTAAGACAGGTGCTCGTGGTT
TGCGTTCAATTCTGGAAAGTGTTCTGCTTGAAACCATGTACGAACTGCCATCTGCGACAGATGTAAGTAAAGTCGTGATT
GATGAATCCGTCATCAATGGTGAGTCAGAACCACTGCTTATTTACAGCAATGCCGACAATCAGGCAGCTGGGGCAGAATA
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: Q87R79

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	58.853	94.131	0.554
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.321	95.07	0.516