Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LG306_RS13615 | Genome accession | NZ_CP085234 |
| Coordinates | 2683462..2683908 (+) | Length | 148 a.a. |
| NCBI ID | WP_404415485.1 | Uniprot ID | - |
| Organism | Brevundimonas vesicularis strain ADH2-360 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2667025..2710651 | 2683462..2683908 | within | 0 |
Gene organization within MGE regions
Location: 2667025..2710651
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG306_RS13440 (LG306_13400) | - | 2667025..2667510 (-) | 486 | WP_082064365.1 | GIY-YIG nuclease family protein | - |
| LG306_RS13445 (LG306_13405) | xerC | 2667553..2668389 (-) | 837 | WP_404415397.1 | tyrosine recombinase XerC | - |
| LG306_RS13450 (LG306_13410) | - | 2668566..2668808 (-) | 243 | WP_404415400.1 | helix-turn-helix transcriptional regulator | - |
| LG306_RS13455 (LG306_13415) | - | 2668805..2669098 (-) | 294 | WP_404415403.1 | hypothetical protein | - |
| LG306_RS13460 (LG306_13420) | - | 2669095..2669508 (-) | 414 | WP_404415405.1 | hypothetical protein | - |
| LG306_RS13465 (LG306_13425) | - | 2669505..2669852 (-) | 348 | WP_404415408.1 | hypothetical protein | - |
| LG306_RS13470 (LG306_13430) | - | 2669849..2670196 (-) | 348 | WP_404415410.1 | hypothetical protein | - |
| LG306_RS13475 (LG306_13435) | - | 2670193..2670588 (-) | 396 | WP_404415413.1 | hypothetical protein | - |
| LG306_RS13480 (LG306_13440) | - | 2670650..2671273 (-) | 624 | WP_404419770.1 | hypothetical protein | - |
| LG306_RS13485 (LG306_13445) | - | 2671332..2671778 (-) | 447 | Protein_2643 | DNA cytosine methyltransferase | - |
| LG306_RS13490 (LG306_13450) | - | 2671775..2673178 (-) | 1404 | WP_404415416.1 | Lar family restriction alleviation protein | - |
| LG306_RS13495 (LG306_13455) | - | 2673175..2673933 (-) | 759 | WP_404415419.1 | hypothetical protein | - |
| LG306_RS13500 (LG306_13460) | - | 2673930..2674268 (-) | 339 | WP_404415422.1 | 6-carboxytetrahydropterin synthase | - |
| LG306_RS13505 (LG306_13465) | - | 2674268..2674501 (-) | 234 | WP_404415425.1 | hypothetical protein | - |
| LG306_RS13510 (LG306_13470) | - | 2674501..2674878 (-) | 378 | WP_404415428.1 | hypothetical protein | - |
| LG306_RS13515 (LG306_13475) | - | 2674882..2675256 (-) | 375 | WP_404415431.1 | HNH endonuclease | - |
| LG306_RS13520 (LG306_13480) | - | 2675256..2675768 (-) | 513 | WP_404415433.1 | hypothetical protein | - |
| LG306_RS13525 (LG306_13485) | bet | 2675765..2676682 (-) | 918 | WP_404415436.1 | phage recombination protein Bet | - |
| LG306_RS13530 (LG306_13490) | - | 2676679..2677269 (-) | 591 | WP_404415439.1 | siphovirus Gp157 family protein | - |
| LG306_RS13535 (LG306_13495) | - | 2677170..2677670 (-) | 501 | WP_404415441.1 | HNH endonuclease signature motif containing protein | - |
| LG306_RS13540 (LG306_13500) | - | 2677802..2678044 (-) | 243 | WP_404415444.1 | hypothetical protein | - |
| LG306_RS13545 (LG306_13505) | - | 2678041..2678457 (-) | 417 | WP_404415447.1 | hypothetical protein | - |
| LG306_RS13550 (LG306_13510) | - | 2678454..2678768 (-) | 315 | WP_404415449.1 | hypothetical protein | - |
| LG306_RS13555 (LG306_13515) | - | 2678765..2679208 (-) | 444 | WP_404415452.1 | hypothetical protein | - |
| LG306_RS13560 (LG306_13520) | - | 2679205..2679624 (-) | 420 | WP_404415455.1 | hypothetical protein | - |
| LG306_RS13565 (LG306_13525) | - | 2679745..2680026 (+) | 282 | WP_404415457.1 | hypothetical protein | - |
| LG306_RS13570 (LG306_13530) | - | 2680053..2681000 (-) | 948 | WP_404415460.1 | hypothetical protein | - |
| LG306_RS13575 (LG306_13535) | - | 2680997..2681623 (-) | 627 | WP_404415463.1 | helix-turn-helix transcriptional regulator | - |
| LG306_RS13580 | - | 2681708..2681956 (+) | 249 | WP_404415466.1 | carph-isopro domain-containing protein | - |
| LG306_RS13585 (LG306_13540) | - | 2681953..2682105 (+) | 153 | WP_404415469.1 | hypothetical protein | - |
| LG306_RS13590 (LG306_13545) | - | 2682109..2682273 (+) | 165 | WP_404415471.1 | hypothetical protein | - |
| LG306_RS13595 (LG306_13550) | - | 2682324..2682767 (+) | 444 | WP_404415474.1 | hypothetical protein | - |
| LG306_RS13600 (LG306_13555) | - | 2682767..2683054 (+) | 288 | WP_404415477.1 | hypothetical protein | - |
| LG306_RS13605 (LG306_13560) | - | 2683051..2683278 (+) | 228 | WP_404415479.1 | hypothetical protein | - |
| LG306_RS13610 (LG306_13565) | - | 2683275..2683460 (+) | 186 | WP_404415482.1 | hypothetical protein | - |
| LG306_RS13615 (LG306_13570) | ssb | 2683462..2683908 (+) | 447 | WP_404415485.1 | single-stranded DNA-binding protein | Machinery gene |
| LG306_RS13620 | - | 2683921..2684307 (+) | 387 | WP_404415488.1 | helix-turn-helix domain-containing protein | - |
| LG306_RS13625 (LG306_13580) | thyX | 2684304..2684978 (+) | 675 | WP_404415490.1 | FAD-dependent thymidylate synthase | - |
| LG306_RS13630 (LG306_13585) | - | 2684993..2685295 (+) | 303 | WP_404415493.1 | hypothetical protein | - |
| LG306_RS13635 (LG306_13590) | - | 2685292..2685534 (+) | 243 | WP_404415495.1 | hypothetical protein | - |
| LG306_RS13640 (LG306_13595) | - | 2685531..2686268 (+) | 738 | WP_404415498.1 | DUF1376 domain-containing protein | - |
| LG306_RS13645 (LG306_13600) | - | 2686458..2687960 (+) | 1503 | WP_404415501.1 | AAA family ATPase | - |
| LG306_RS13650 (LG306_13605) | - | 2688148..2688864 (+) | 717 | WP_404415503.1 | hypothetical protein | - |
| LG306_RS13655 (LG306_13610) | - | 2688998..2689207 (+) | 210 | WP_404415506.1 | hypothetical protein | - |
| LG306_RS13660 (LG306_13615) | - | 2689217..2689408 (+) | 192 | WP_404415509.1 | hypothetical protein | - |
| LG306_RS13665 (LG306_13620) | - | 2689421..2690011 (+) | 591 | WP_404415512.1 | hypothetical protein | - |
| LG306_RS13670 (LG306_13625) | - | 2689941..2691278 (+) | 1338 | WP_404415515.1 | DNA-packaging protein | - |
| LG306_RS13675 (LG306_13630) | - | 2691268..2692674 (+) | 1407 | WP_404415518.1 | DUF4055 domain-containing protein | - |
| LG306_RS13680 (LG306_13635) | - | 2692674..2693666 (+) | 993 | WP_404415521.1 | minor capsid protein | - |
| LG306_RS13685 (LG306_13640) | - | 2694020..2694613 (+) | 594 | WP_404415524.1 | hypothetical protein | - |
| LG306_RS13690 (LG306_13645) | - | 2694667..2695680 (+) | 1014 | WP_404415527.1 | major capsid protein | - |
| LG306_RS13695 (LG306_13650) | - | 2695738..2695938 (+) | 201 | WP_404415529.1 | hypothetical protein | - |
| LG306_RS13700 (LG306_13655) | - | 2695942..2696367 (+) | 426 | WP_404415532.1 | hypothetical protein | - |
| LG306_RS13705 (LG306_13660) | - | 2696364..2696714 (+) | 351 | WP_404415534.1 | hypothetical protein | - |
| LG306_RS13710 (LG306_13665) | - | 2696714..2697109 (+) | 396 | WP_404415537.1 | hypothetical protein | - |
| LG306_RS13715 (LG306_13670) | - | 2697106..2697534 (+) | 429 | WP_404415540.1 | hypothetical protein | - |
| LG306_RS13720 (LG306_13675) | - | 2697537..2697977 (+) | 441 | WP_404415543.1 | phage tail tube protein | - |
| LG306_RS13725 (LG306_13680) | - | 2697977..2698357 (+) | 381 | WP_404415545.1 | hypothetical protein | - |
| LG306_RS13730 (LG306_13685) | - | 2698606..2698950 (+) | 345 | WP_404415548.1 | hypothetical protein | - |
| LG306_RS13735 (LG306_13690) | - | 2699014..2701218 (+) | 2205 | WP_404415550.1 | hypothetical protein | - |
| LG306_RS13740 (LG306_13695) | - | 2701218..2701799 (+) | 582 | WP_404415553.1 | hypothetical protein | - |
| LG306_RS13745 (LG306_13700) | - | 2701799..2702431 (+) | 633 | WP_404415555.1 | hypothetical protein | - |
| LG306_RS13750 (LG306_13705) | - | 2702440..2702865 (+) | 426 | WP_404415557.1 | DUF6950 family protein | - |
| LG306_RS13755 (LG306_13710) | - | 2702866..2705109 (+) | 2244 | WP_404415560.1 | hypothetical protein | - |
| LG306_RS13760 (LG306_13715) | - | 2705124..2705516 (+) | 393 | WP_404415563.1 | hypothetical protein | - |
| LG306_RS13765 (LG306_13720) | - | 2705516..2707588 (+) | 2073 | WP_404415565.1 | discoidin domain-containing protein | - |
| LG306_RS13770 (LG306_13725) | - | 2707666..2708145 (+) | 480 | WP_404415568.1 | hypothetical protein | - |
| LG306_RS13775 (LG306_13730) | - | 2708147..2708353 (+) | 207 | WP_374322138.1 | hypothetical protein | - |
| LG306_RS13780 (LG306_13735) | - | 2708818..2709438 (+) | 621 | WP_404415571.1 | glycoside hydrolase family 19 protein | - |
| LG306_RS13785 (LG306_13740) | - | 2709435..2709812 (+) | 378 | WP_404415574.1 | hypothetical protein | - |
| LG306_RS13790 (LG306_13745) | - | 2710055..2710651 (+) | 597 | WP_404415577.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16370.21 Da Isoelectric Point: 5.9367
>NTDB_id=616187 LG306_RS13615 WP_404415485.1 2683462..2683908(+) (ssb) [Brevundimonas vesicularis strain ADH2-360]
MAGSVNKVILVGNLGRDPEIRTMQNGDRVANLSLATSESWRDKSSGERKEKTEWHRVTVFNEGIVKVCENYLKKGSTIYV
EGQLQTRKWTDQQGVEKYSTEIVLKPFNGVLTMLGGAPSGEGQRSAATSDNQSSGPRDSYDLNDDIPF
MAGSVNKVILVGNLGRDPEIRTMQNGDRVANLSLATSESWRDKSSGERKEKTEWHRVTVFNEGIVKVCENYLKKGSTIYV
EGQLQTRKWTDQQGVEKYSTEIVLKPFNGVLTMLGGAPSGEGQRSAATSDNQSSGPRDSYDLNDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=616187 LG306_RS13615 WP_404415485.1 2683462..2683908(+) (ssb) [Brevundimonas vesicularis strain ADH2-360]
ATGGCCGGCAGCGTCAACAAGGTCATCTTGGTCGGCAACCTCGGGCGCGACCCCGAAATCCGCACGATGCAGAACGGCGA
CCGCGTCGCCAACCTCAGCCTCGCCACCTCCGAGAGCTGGCGGGACAAGTCCTCCGGCGAGCGCAAGGAGAAGACCGAGT
GGCACCGCGTCACGGTCTTCAACGAGGGCATCGTCAAGGTCTGCGAGAATTACCTGAAGAAGGGCTCGACCATCTACGTC
GAGGGCCAGCTTCAGACCCGCAAATGGACTGATCAGCAGGGCGTCGAGAAGTACTCGACGGAGATCGTGCTGAAGCCGTT
CAACGGCGTCCTGACCATGCTCGGCGGCGCGCCCTCCGGTGAGGGCCAGCGGTCTGCCGCCACTTCCGACAACCAGTCCT
CAGGTCCGCGCGACAGCTACGACCTGAACGACGACATTCCGTTCTGA
ATGGCCGGCAGCGTCAACAAGGTCATCTTGGTCGGCAACCTCGGGCGCGACCCCGAAATCCGCACGATGCAGAACGGCGA
CCGCGTCGCCAACCTCAGCCTCGCCACCTCCGAGAGCTGGCGGGACAAGTCCTCCGGCGAGCGCAAGGAGAAGACCGAGT
GGCACCGCGTCACGGTCTTCAACGAGGGCATCGTCAAGGTCTGCGAGAATTACCTGAAGAAGGGCTCGACCATCTACGTC
GAGGGCCAGCTTCAGACCCGCAAATGGACTGATCAGCAGGGCGTCGAGAAGTACTCGACGGAGATCGTGCTGAAGCCGTT
CAACGGCGTCCTGACCATGCTCGGCGGCGCGCCCTCCGGTGAGGGCCAGCGGTCTGCCGCCACTTCCGACAACCAGTCCT
CAGGTCCGCGCGACAGCTACGACCTGAACGACGACATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
46.821 |
100 |
0.547 |
| ssb | Glaesserella parasuis strain SC1401 |
51.923 |
100 |
0.547 |
| ssb | Neisseria gonorrhoeae MS11 |
38.286 |
100 |
0.453 |
| ssb | Neisseria meningitidis MC58 |
38.286 |
100 |
0.453 |