Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NRF20_RS24670 Genome accession   NZ_CP102361
Coordinates   5391384..5391983 (+) Length   199 a.a.
NCBI ID   WP_093899342.1    Uniprot ID   -
Organism   Streptomyces sp. R-74717     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5386384..5396983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF20_RS24645 (NRF20_24595) - 5386624..5387997 (+) 1374 WP_266360265.1 aspartate aminotransferase family protein -
  NRF20_RS24650 (NRF20_24600) - 5388103..5388876 (+) 774 WP_398628159.1 GntR family transcriptional regulator -
  NRF20_RS24655 (NRF20_24605) - 5389083..5389733 (+) 651 WP_266365455.1 hypothetical protein -
  NRF20_RS24660 (NRF20_24610) - 5389835..5390608 (-) 774 WP_398628158.1 SLATT domain-containing protein -
  NRF20_RS24665 (NRF20_24615) - 5390965..5391300 (+) 336 WP_351086067.1 YbaB/EbfC family nucleoid-associated protein -
  NRF20_RS24670 (NRF20_24620) recR 5391384..5391983 (+) 600 WP_093899342.1 recombination mediator RecR Machinery gene
  NRF20_RS24675 (NRF20_24625) - 5392097..5392756 (+) 660 WP_266360271.1 DUF5063 domain-containing protein -
  NRF20_RS24680 (NRF20_24630) - 5393531..5394802 (+) 1272 WP_266360279.1 aspartate kinase -
  NRF20_RS24685 (NRF20_24635) - 5394799..5395863 (+) 1065 WP_266360281.1 aspartate-semialdehyde dehydrogenase -
  NRF20_RS24690 (NRF20_24640) - 5396137..5396799 (+) 663 WP_413753286.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21902.17 Da        Isoelectric Point: 5.1558

>NTDB_id=616140 NRF20_RS24670 WP_093899342.1 5391384..5391983(+) (recR) [Streptomyces sp. R-74717]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQQEQCNICRDARRDQTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=616140 NRF20_RS24670 WP_093899342.1 5391384..5391983(+) (recR) [Streptomyces sp. R-74717]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCTTTCCACATCCTGCAGGCCGAGCCGACCGATGTGCGCCGCCTTGCCCATGCCCTCCTGGAGGTCAAGGACAAAGTCC
GGTTCTGTTCGGTCTGCGGCAATGTCGCCCAGCAGGAACAGTGCAACATCTGCCGCGACGCGCGCCGCGACCAGACGGTC
ATCTGTGTGGTCGAGGAGCCGAAGGATGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGGTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGATCTGCGCATCCGCGAGCTGCTCGCCCGTCTCGCCGACGGAT
CGATCACGGAGCTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTGCGGGTCACCAGGCTGGCCAGCGGCCTGCCGGTGGGTGGCGACCTGGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462