Detailed information NTG0615978

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LG312_RS01790
• Genome accession: NZ_CP085221
• Coordinates: 387065..387916 (+)
• Length: 283 a.a.
• NCBI ID: WP_404297825.1
• Uniprot ID: -
• Organism: Halomonas sp. strain DBC-59
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 382065..392916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG312_RS01765 (LG312_01770)	-	382926..383228 (-)	303	WP_404297821.1	cory-CC-star protein	-
LG312_RS01770 (LG312_01775)	-	383244..384920 (-)	1677	WP_404297823.1	carbon starvation protein A	-
LG312_RS01775 (LG312_01780)	coaE	385143..385787 (+)	645	WP_404299582.1	dephospho-CoA kinase	-
LG312_RS01780 (LG312_01785)	yacG	385784..386014 (+)	231	WP_379756222.1	DNA gyrase inhibitor YacG	-
LG312_RS01785 (LG312_01790)	-	386022..386900 (+)	879	WP_404297824.1	DNA replication terminus site-binding protein	-
LG312_RS01790 (LG312_01795)	pilD	387065..387916 (+)	852	WP_404297825.1	prepilin peptidase	Machinery gene
LG312_RS01795 (LG312_01800)	-	387934..388512 (-)	579	WP_379756213.1	hypoxanthine-guanine phosphoribosyltransferase	-
LG312_RS01800 (LG312_01805)	nagZ	388550..389560 (-)	1011	WP_379756210.1	beta-N-acetylhexosaminidase	-
LG312_RS01805 (LG312_01810)	-	389668..390333 (-)	666	WP_379756207.1	TetR/AcrR family transcriptional regulator	-
LG312_RS01810 (LG312_01815)	lexA	390607..391257 (+)	651	WP_379756204.1	transcriptional repressor LexA	-
LG312_RS01815 (LG312_01820)	dinB	391291..392340 (+)	1050	WP_404297828.1	DNA polymerase IV	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 30765.22 Da
• Isoelectric Point: 7.9221

>NTDB_id=615978 LG312_RS01790 WP_404297825.1 387065..387916(+) (pilD) [Halomonas sp. strain DBC-59]
MLDLPPLLLWPLAAFIGLCLGSFLNVVIVRLPVMLMLGWRAEAREALELPAEEQPRFNLATPRSMCPSCETPIAWHDNLP
VVGWLKRRGRCASCGTRISPQYPLVELAGGVLTLAVVALFGPSWQGLFVLGACLALLAMAVIDLRTQLLPDLLTLPLLWA
GLLYQLLFQPLLLPSAVIGAMAGYLVLWSFYWAFKLITGKEGMGYGDFKLLAALGAWMGWQYLPLLLILSAGIGAIIGIL
VQLAVPRLRGAPMPFGPYLALAGWVALLAGEPLMAVYGQFFLL

Nucleotide

• Length: 852 bp

>NTDB_id=615978 LG312_RS01790 WP_404297825.1 387065..387916(+) (pilD) [Halomonas sp. strain DBC-59]
TTGCTAGACCTGCCCCCTCTCTTACTCTGGCCGCTGGCCGCCTTTATCGGTCTGTGCCTGGGCAGCTTTCTCAACGTGGT
GATCGTGCGCCTGCCGGTAATGCTGATGCTGGGCTGGCGGGCCGAGGCCCGGGAGGCACTGGAGCTCCCCGCCGAGGAGC
AGCCCCGCTTCAACCTGGCCACACCGCGCTCGATGTGCCCCAGCTGCGAGACGCCCATCGCCTGGCACGACAACCTGCCG
GTGGTCGGCTGGCTCAAGCGCCGCGGGCGCTGCGCCAGCTGTGGCACACGCATCAGTCCCCAATATCCTCTGGTGGAGCT
GGCCGGCGGAGTGCTAACACTGGCCGTGGTGGCACTCTTCGGGCCGAGCTGGCAGGGTCTCTTCGTGCTGGGGGCCTGCC
TGGCGCTGCTGGCCATGGCGGTAATCGACCTGCGTACCCAACTGCTCCCGGACCTTCTTACCCTGCCGCTGCTGTGGGCG
GGGCTGCTCTACCAGCTGCTGTTCCAGCCGCTGCTTCTGCCGAGTGCCGTAATCGGCGCCATGGCGGGGTATCTGGTGCT
GTGGAGCTTCTACTGGGCGTTCAAATTGATCACCGGCAAGGAGGGCATGGGCTACGGCGACTTCAAGCTGCTGGCGGCAC
TCGGCGCCTGGATGGGGTGGCAGTATCTGCCGCTGTTGCTGATCCTCTCCGCGGGGATCGGCGCCATCATCGGCATTCTG
GTGCAGCTGGCGGTGCCGCGGCTGCGCGGCGCGCCGATGCCCTTCGGGCCCTACCTGGCGCTCGCCGGCTGGGTGGCCCT
GCTCGCCGGCGAGCCGCTGATGGCGGTCTATGGGCAGTTCTTTCTGCTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (133-239)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (16-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.292	95.76	0.491
pilD	Vibrio campbellii strain DS40M4	48.375	97.88	0.473
pilD	Acinetobacter baumannii D1279779	48.54	96.82	0.47
pilD	Acinetobacter nosocomialis M2	47.81	96.82	0.463
pilD	Neisseria gonorrhoeae MS11	47.547	93.64	0.445