Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NQZ87_RS05910 Genome accession   NZ_CP102154
Coordinates   1206027..1206623 (-) Length   198 a.a.
NCBI ID   WP_226961177.1    Uniprot ID   -
Organism   Streptococcus suis strain SS15055_N2_C15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1201027..1211623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ87_RS05890 (NQZ87_05890) - 1202129..1202827 (-) 699 WP_012775213.1 TIGR02206 family membrane protein -
  NQZ87_RS05895 (NQZ87_05895) murF 1202918..1204279 (-) 1362 WP_012775214.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  NQZ87_RS05900 (NQZ87_05900) - 1204408..1204788 (-) 381 WP_012775215.1 OsmC family protein -
  NQZ87_RS05905 (NQZ87_05905) - 1204876..1205922 (-) 1047 WP_012775216.1 D-alanine--D-alanine ligase -
  NQZ87_RS05910 (NQZ87_05910) recR 1206027..1206623 (-) 597 WP_226961177.1 recombination mediator RecR Machinery gene
  NQZ87_RS05915 (NQZ87_05915) pbp2b 1206632..1208707 (-) 2076 WP_012775443.1 penicillin-binding protein PBP2B -
  NQZ87_RS05920 (NQZ87_05920) - 1208784..1209533 (-) 750 WP_012027298.1 ATP-binding cassette domain-containing protein -
  NQZ87_RS05925 (NQZ87_05925) - 1209696..1210238 (-) 543 WP_012027299.1 ATP-binding cassette domain-containing protein -
  NQZ87_RS05930 (NQZ87_05930) vicX 1210757..1211560 (-) 804 WP_012027300.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21717.86 Da        Isoelectric Point: 4.4829

>NTDB_id=615789 NQZ87_RS05910 WP_226961177.1 1206027..1206623(-) (recR) [Streptococcus suis strain SS15055_N2_C15]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCPICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=615789 NQZ87_RS05910 WP_226961177.1 1206027..1206623(-) (recR) [Streptococcus suis strain SS15055_N2_C15]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCCCCATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAGTCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATCCAAGAGTATCACGGTCTCTACCATGTATT
GCATGGCTTGATTTCCCCTATGAACGGGATTGGGCCAGACGATATTAACCTGAAAACTCTGCTGACCCGCTTGATGGAAA
ATGAGGTGACAGAGGTGATTGTGGCGACTAATGCAACAGCAGATGGAGAGGCTACATCCATGTATATCTCACGTGTCCTT
AAACCTGCTGGAATCAAAGTAACTAGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495