Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   NQZ90_RS05740 Genome accession   NZ_CP102148
Coordinates   1158812..1162078 (-) Length   1088 a.a.
NCBI ID   WP_203200523.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1153812..1167078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS05730 (NQZ90_05730) plsY 1154504..1155148 (+) 645 WP_015646902.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  NQZ90_RS05735 (NQZ90_05735) rexA 1155159..1158812 (-) 3654 WP_203200524.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  NQZ90_RS05740 (NQZ90_05740) rexB 1158812..1162078 (-) 3267 WP_203200523.1 ATP-dependent nuclease subunit B Machinery gene
  NQZ90_RS05745 (NQZ90_05745) - 1162183..1162347 (-) 165 WP_014638044.1 hypothetical protein -
  NQZ90_RS05750 (NQZ90_05750) obgE 1162722..1164035 (-) 1314 WP_024388851.1 GTPase ObgE -
  NQZ90_RS05755 (NQZ90_05755) - 1164239..1164367 (-) 129 WP_002943675.1 DUF4044 domain-containing protein -
  NQZ90_RS05760 (NQZ90_05760) uvrC 1165070..1166839 (-) 1770 WP_257110096.1 excinuclease ABC subunit UvrC Machinery gene

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124591.83 Da        Isoelectric Point: 5.0625

>NTDB_id=615593 NQZ90_RS05740 WP_203200523.1 1158812..1162078(-) (rexB) [Streptococcus suis strain DNC15]
MKLVYTDIRNPLTQYLTDTAAEFTKEGKRVFYIAPNSLSFEMERKVLEYLPEQATFDIIVTRFGQLARYLMIDRKESAQP
LDDVGLAMIFFRVLSQFEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPDKQADLVKIFLAVTDILSK
EGFEHQSKLAQLTSLVETGQLDEQLKNIVLVVDGFSRFSAEEESLVSALNERVSEILIGVYASKKAVQATYAEGNVYQAN
VDFLRQLSAQFLTKATYIGQEPVLDSIGKFSKNMEAYYDYSGTMLDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQ
GARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYASISQK
ELDLFESYILFADMKGQAAFSRAFVANSRADYDAEVIKEKRLVYDLAVLEPLRAKIMEPLNQLFKAGPQSGVALLEKFMV
FLEAIELPKNMEKMSRNLSEVEQEKEEQVWKSFTHILENFHQIFGNEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVK
SYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNAATEQLVIS
TPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKRLSPQDIGHYKSLLSRLIESERPSLDNEEWEGQRAFWTVLVRHLKKK
LESQGIEIPTITGEITSKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLHRI
FERVVMDQSELDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDKIARSSATILRDNDLVEIDGQEKSFRQDKALV
FDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQD
PIIKLKDTKNLEQLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAMDILDGRFAINPY
TKDGRSVAGEQLKAITGFEADRHMGMARRLAKEAKRQDWMERMKGGQD

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=615593 NQZ90_RS05740 WP_203200523.1 1158812..1162078(-) (rexB) [Streptococcus suis strain DNC15]
ATGAAATTAGTCTATACAGATATTCGCAATCCTCTGACGCAGTATTTAACGGATACCGCAGCAGAATTTACTAAGGAAGG
TAAGCGAGTTTTTTATATTGCTCCAAACTCCCTATCCTTTGAGATGGAGCGCAAGGTCTTGGAATACCTGCCTGAACAGG
CAACTTTTGATATTATCGTGACCCGTTTTGGGCAATTGGCCCGCTATTTGATGATTGATAGGAAAGAATCAGCTCAACCG
CTGGATGATGTTGGTCTGGCCATGATTTTCTTTCGTGTTCTATCGCAATTTGAAGATGGCGACTTGAAAGTCTATGGTCG
TTTGCAGACAGATTTTGGTTTCATTAACCAGCTAGTTGCTTTATATAAAGAATTGCAACGGGCAAATATGTCTATTTTGG
ACTTGGAAGCCATGGACTCACCAGATAAGCAGGCTGATTTGGTAAAGATTTTTCTGGCTGTAACAGACATTTTGTCCAAA
GAAGGCTTTGAGCATCAGTCTAAGTTGGCACAGCTGACTAGCTTGGTAGAAACTGGTCAGTTGGATGAGCAGTTGAAGAA
CATTGTGCTGGTGGTAGACGGATTTTCTCGTTTTTCGGCAGAAGAAGAATCTTTAGTAAGTGCTTTAAATGAACGAGTGT
CGGAAATCCTGATTGGTGTATATGCCAGCAAGAAAGCTGTGCAAGCCACCTATGCGGAAGGCAACGTATATCAAGCCAAC
GTTGACTTTTTACGTCAGTTATCAGCGCAGTTCCTGACTAAGGCAACTTATATTGGTCAAGAGCCAGTCTTGGACAGTAT
CGGTAAATTTTCAAAGAATATGGAAGCCTATTATGACTACAGCGGGACCATGCTTGACTTGACTCCAGCAGACCAAGAAA
AAATCCAACTTTGGGAGGTTGTTAACCAAAAAGAAGAGGTGGAGCAGGTTGCGACTGCAATTCGTCAGCATGTGCATCAA
GGTGCTCGCTATAAAGACATCTTGTTGCTCTTGGGTGACGTAGATAGCTACAAGTTGCAGATTGGCAAGATTTTTGACAA
ATATGACATTCCTTACTACTTCGGCAAGGCAGAGGAGATGAGTCATCATCCGTTGGTTCATTTTGTGGAATCCTTGGAAC
GTTTGCGTCGCTATCGTTTTCGTGCGGAAGACCTGCTCAATCTCCTCAAATCTGGTTTGTACGCCAGCATTTCCCAAAAG
GAGCTGGACCTATTTGAGTCTTACATCCTCTTTGCGGATATGAAGGGGCAGGCTGCTTTTTCGAGGGCTTTTGTGGCCAA
TAGCAGAGCTGATTATGACGCTGAAGTCATTAAGGAGAAAAGGCTTGTCTATGATTTGGCTGTCTTGGAACCCCTACGTG
CTAAGATTATGGAACCTTTGAATCAGCTGTTTAAGGCTGGACCACAATCTGGAGTTGCCTTGCTTGAGAAATTTATGGTA
TTTTTGGAGGCAATTGAGCTTCCTAAAAATATGGAAAAAATGTCTCGAAATTTGAGCGAAGTAGAGCAGGAAAAAGAAGA
GCAGGTCTGGAAAAGTTTTACCCATATTCTTGAGAATTTTCATCAGATTTTCGGAAATGAAAAATTGAAAATGGATGATT
TTCTGGCTATTTTACAGGCTGGAATGCAGGCCAGCCACTATCGTACCGTTCCTGCAACGGTTGATGTGGTCAATGTCAAA
TCCTATGATTTGATCGAGCCGCACACTGCAAAGTATGTTTATGCTATTGGAATGGGCCAGTCCAATTTTCCAAAAGTTGC
CAAGAATACCAGTCTATTGACAGAAGAAGAGATGGAAAAAGTCAATCTTGTCTCGGCTAGTTCTTCACGTTTTGATTTGG
TCAGCCGAGAGAATATCAAGAAGAACCATGCTGCCATGATGTCCCTGCTTAATGCTGCGACGGAACAGTTAGTTATTTCC
ACACCTCAGATTTATAACGAAGGCGAAGATAGTCTCTCCCCATACATCAAGATTCTCCAAAAAATGGGGCTGAAATCCGA
AGAACGTGGTCGGATTAAAAGACTTAGTCCGCAAGACATCGGTCACTACAAGAGTCTCTTATCCCGTTTGATTGAGTCGG
AAAGACCATCTCTTGATAATGAAGAATGGGAAGGGCAGAGGGCCTTCTGGACAGTCTTGGTTCGCCATTTGAAGAAGAAA
TTGGAGTCGCAAGGCATTGAAATTCCGACCATTACTGGCGAAATTACTTCTAAACAACTTTCAGATGAAACCTTGGCTGC
TTTATATCCAGAGGATAAGCCACTCAATCTTTCTGCATCCAGCTTGACCAATTTCTACAATAATCAATATCTTTACTTTG
TCCGTAATGTTCTTCGCTTGCGGGAACAGGAATCCATCCATCCGACTGCCTTTCAGCATGGTTTGTTCTTGCATCGGATT
TTTGAACGAGTGGTCATGGACCAATCTGAGCTAGATTTTGATCAAAAAGTGGACAAGGCAATCCTGCGTACGCGTGACGA
GGCAGAATTTGCTATGTTTTATAACCAAGATGCGGATGCTCGCTATACGGAGGAGGTGCTAGATAAGATTGCTCGCTCCA
GTGCGACTATTTTGCGGGATAATGATTTGGTTGAAATTGATGGTCAGGAAAAGAGTTTTCGTCAGGATAAGGCGCTTGTT
TTTGACCTTCAAAATGGCAAGAGTGTGCATGTAAATGGTACCATTGACCGCTTGGATACCTTACAAATCAATCAGGCTGT
CGGTGTTGTGGATTACAAGTCCAGCGACCAATCTTTTTCAGTTGGGGATTTTTACAATGGTCTAAAACCTCAGTTGGTAA
CCTACTTGGCAGCTTTGCAAGAGCTGGATGAAACCAAGGATAAACCTGTTTTTGGGGCTATGTATTTGCATTTGCAGGAT
CCGATTATCAAATTAAAAGACACGAAGAATTTAGAACAGCTAGAAGGAGCTGCCAATACTAGCTTGGTTTACAAGGGGCT
TTTCTTGAAGGAGGAAAGTCTAGGGCTCAATCATTTTTATCAGACTCGTAACCAACTCTATACGGAAGATGAGTTTGCGG
TTTTATTGAACCACAACCAAGAACTCTACAAACAAGCTGCCATGGACATCCTGGATGGTCGCTTTGCTATTAACCCTTAT
ACCAAAGATGGGCGTTCGGTGGCAGGTGAGCAGCTGAAGGCAATCACTGGTTTTGAGGCGGATCGGCACATGGGCATGGC
ACGGCGGTTGGCCAAAGAGGCCAAGCGTCAAGATTGGATGGAACGAATGAAAGGAGGTCAGGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(757-1041)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.787

100

0.454