Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   NQZ90_RS05735 Genome accession   NZ_CP102148
Coordinates   1155159..1158812 (-) Length   1217 a.a.
NCBI ID   WP_203200524.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1150159..1163812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS05720 (NQZ90_05720) - 1150291..1151646 (-) 1356 WP_014638039.1 hypothetical protein -
  NQZ90_RS05725 (NQZ90_05725) parE 1152412..1154361 (-) 1950 WP_024411057.1 DNA topoisomerase IV subunit B -
  NQZ90_RS05730 (NQZ90_05730) plsY 1154504..1155148 (+) 645 WP_015646902.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  NQZ90_RS05735 (NQZ90_05735) rexA 1155159..1158812 (-) 3654 WP_203200524.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  NQZ90_RS05740 (NQZ90_05740) rexB 1158812..1162078 (-) 3267 WP_203200523.1 ATP-dependent nuclease subunit B Machinery gene
  NQZ90_RS05745 (NQZ90_05745) - 1162183..1162347 (-) 165 WP_014638044.1 hypothetical protein -

Sequence


Protein


Download         Length: 1217 a.a.        Molecular weight: 139811.08 Da        Isoelectric Point: 5.1490

>NTDB_id=615592 NQZ90_RS05735 WP_203200524.1 1155159..1158812(-) (rexA) [Streptococcus suis strain DNC15]
MAFEEFLSPEEIKAVQLAEANSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFT
VKAAGELKERIEKNLNETIAETTDTDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEQDENGEFRRLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIEQILEQG
FKKKVLDKLYQAADFFRYHVEWGRNDFGSAKYFSSVEDVIELLTGIDHLDSKQLMERVERILLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISGLRDLGQEVYELTLLKDYQIQAVPLLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENADIRQLFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANPQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSSGQKIAQPKHEMEYLIYDQQESAHSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQGGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAFAKLHSIYD
LIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLILKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPVLEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALETIHAEQAVKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASLQTDSLSQEQFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPSQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGEKIEVVEVKVN

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=615592 NQZ90_RS05735 WP_203200524.1 1155159..1158812(-) (rexA) [Streptococcus suis strain DNC15]
ATGGCTTTTGAAGAATTTTTAAGCCCGGAAGAAATCAAGGCTGTGCAGCTGGCGGAAGCCAATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAAGCCATCTACACGCACGGTCAGAATGTTCTGGTCTCTGCATCGGCTGGGTCAGGAAAGA
CCTTCGTTATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGTGTGGGAATCGACCAGCTCTTTATCTCGACCTTTACA
GTCAAAGCGGCTGGTGAATTGAAGGAGCGGATCGAGAAAAATCTCAATGAAACCATTGCGGAGACGACCGATACGGACTT
GCGTCGGCATTTGTCTGCCCAGTTGGCGGATTTGACCAAGGCGGATATTGGGACCATGGACTCCTTTACGCAGAAATTGG
TAACGACTTACGGTTATAGCCTTGGCATTTCTCCACAGTTTCGGATTTTACAGGATGAGACAGAAAAAGCGAGTCTGAAA
AAAGAGGTCTTTGACCAGCTCTTTGCAGATTATCTTGAACAGGATGAAAATGGGGAATTTCGTAGATTGGTTCGCAATTT
TTCGGGCAACCGTAAGGATAACAGTGGTTTCCGTCAGGTTGTTTATCAGGTACATGATTTTAGCCAATCGACGAGCAGTC
CAACTAAATGGCTGAAAGAGCAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCAGATCTTAGAGCAAGGC
TTTAAGAAAAAAGTGTTAGACAAGCTCTATCAAGCTGCAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGTTCTGCTAAGTATTTTTCAAGCGTTGAAGATGTAATCGAATTGTTAACTGGTATAGACCATCTGGATTCCAAGCAGT
TGATGGAGCGGGTTGAAAGAATCCTTCTCATCAATGACCAGTCCAGAGGCAAGGGCCTGACCAATGCCAATCGACCAAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGATTATCTCTGGACTACGAGATTTGGGTCA
GGAAGTTTATGAATTGACCCTGCTGAAAGATTATCAGATTCAAGCTGTGCCCTTGCTGATATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTAAAAATCAAGGAAGCAGCTTTTGAATTTGGTGATATTGGGCATTTCGCTATT
CGTATTTTAGAAGAAAATGCGGACATCCGCCAGCTTTTCCAAGAAAAATACCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGTTAGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGCGACATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCGATGATTTTCCAGGAGAAATTTGAACTGTATCAGGCAAATCCTCAGGCTGGG
AAATTGATTTTGCTTAAGGAAAATTTCCGTAGTCAGATTGAGGTCTTGGAGGCGACTAATGCCATTTTCACGCGCCTGAT
GGACCGTCAAGTTGGGGAAATCAAGTATGACGACACCCACAGTCTAGTGGCTGGTAGTTCTGGTCAAAAAATTGCCCAGC
CTAAGCATGAGATGGAATATTTGATTTACGACCAGCAGGAGAGCGCACATTCTTCAACGGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATCGAGGTTGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGAGCAGACTTCAAGGATAT
CACTCTCTTAGTACAAAAGCGGACGCACAATGACCTCATTATGTCTATTTTTGAAAAACATGGGATTCCAATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATCATGCTGGATACCTTGCGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCCCTGCTTAAATCGCCTATGTTCCGATTCGATGAGGATGAGCTGACACGGATTTCCTTGCA
GGGTGGTACAGGTTTCTTTTACCAAAAAATGGAAATAGCCCAGCAAACAAATGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATTAAGGATTTCTTGTCTATCTTAGAAAACTGGCGTGCTTTTGCCAAATTGCATTCTATCTATGAC
TTGATTTGGAAGATTTTCAATGAAAAATTCTACTATGACTATGTCGGTGCTCTTCCAAATGGCAGCAAGCGTCAGGCCAA
TCTATATGCACTAGGTCTGCGTGCCAACCAGTTTGAAAAAACAGGTTACAAGGGCTTGTCCCGCTTCATTGCCATGATTG
ACCGTGCCTTAGCAAATGATAAGGATTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTACAGCTTATGACCATC
CATAAGTCAAAAGGTTTGGAGTTTAAATATGTCTTCCTCATGAACATCGATAAGCGATTCAACTTGGAAGACCATTACCA
GTCAGTCATTATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCGGATATGAAAGATAAGGTAAATAGCCCATTGC
CTCAGGTGCGAGTCTTAATGAACACCCTCCCTTATCAAAATAATCTCCAAGAGCTAAAAATTGCCAATCTTTCGGAACAA
ATGCGGTTGCTTTACGTTGCACTAACGCGTGCTGAGAAGAAGCTGTATCTGGTTGGAAAGGGCAATGCTGACAAGTTAGC
TGAAAAATACGATGGCAAAAAGGAAAATGGCGTACTTGCCCAATCAACTCGTGAAAGCATGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTCTCAGGAGAAGACTTGCACTTCAAGAAAGTCTTTGTGACGGACGAGGATTTGACAGAA
GAGAAGATTGGTAAACTTATATTGAAGAGTAAGCTAGAAGACGCCAGCCTTAAAGATATTCGTCAATCAGAAGACATCGC
CCAGGCCTTGGACCAGTTGTCTTCTGTTCAAGAGTTGAACGAACGCTATAAGGCTGCCATTGAATTACCAAGTTTACGTA
CTCCAAGTCAAATCAAGAAACTCTATGAGCCTGTCTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCAAAA
CGGACCTTCAACTTGCCAGATTTCTCCAAGAAACCAAAAATCACTGGAGCCCAAGTCGGTTCGGCAGTCCATGAACTTAT
GCAACGTTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGAAGCCCTAGAAACTATTCATGCTGAGCAAGCGG
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTCGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAC
AAACTCCACCGAGAAGCTCCATTTGCAAGTTTGCAGACAGATTCTTTGTCACAGGAACAATTTGTCCTTCGTGGGATTAT
CGATGGCTACCTACTATATGATGATCATATTGTCCTCTTTGATTACAAGACAGACAAATATGACCAGCCAAGCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTATGCCGAGGCATTGAAAAAAGCTTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAAGATTGAAGTGGTTGAAGTCAAGGTAAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.167

100

0.524