Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NQZ90_RS02955 Genome accession   NZ_CP102148
Coordinates   603355..603951 (+) Length   198 a.a.
NCBI ID   WP_014637682.1    Uniprot ID   A0AA96ZYK5
Organism   Streptococcus suis strain DNC15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 598355..608951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS02940 (NQZ90_02940) vicX 598740..599543 (+) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  NQZ90_RS02945 (NQZ90_02945) vga(F) 599797..601182 (+) 1386 WP_257110346.1 ABC-F type ribosomal protection protein Vga(F) -
  NQZ90_RS02950 (NQZ90_02950) pbp2b 601274..603346 (+) 2073 WP_257110347.1 penicillin-binding protein PBP2B -
  NQZ90_RS02955 (NQZ90_02955) recR 603355..603951 (+) 597 WP_014637682.1 recombination mediator RecR Machinery gene
  NQZ90_RS02960 (NQZ90_02960) - 604056..605102 (+) 1047 WP_024395244.1 D-alanine--D-alanine ligase -
  NQZ90_RS02965 (NQZ90_02965) - 605190..605570 (+) 381 WP_024382539.1 OsmC family protein -
  NQZ90_RS02970 (NQZ90_02970) - 605572..606648 (+) 1077 WP_044675392.1 ABC transporter permease -
  NQZ90_RS02975 (NQZ90_02975) - 606658..607326 (+) 669 WP_024388077.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21707.83 Da        Isoelectric Point: 4.4829

>NTDB_id=615569 NQZ90_RS02955 WP_014637682.1 603355..603951(+) (recR) [Streptococcus suis strain DNC15]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSICGNLTDQDPCGICQDTSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=615569 NQZ90_RS02955 WP_014637682.1 603355..603951(+) (recR) [Streptococcus suis strain DNC15]
ATGCTCTATCCAACTCCCATAGCTAAATTAATTGACAGTTATTCAAAACTACCAGGAATCGGTATTAAAACAGCTACGCG
TCTAGCCTTTTATACCATTGGTATGGAAGATGATGTAGTCAACGAATTTGCTAAAAATCTCCTGGCGGCTAAGAGAGATT
TGACCTATTGTTCCATTTGCGGCAATTTGACAGACCAGGACCCTTGCGGTATTTGTCAAGATACCAGCCGTGACCAGTCG
ACCATTTTAATTGTAGAAGACAGTCGAGATGTGACAGCCTTGGAAAATATCCAAGAATACCACGGTCTTTACCATGTCTT
GCATGGCTTGATTTCCCCGATGAATGGCATTGGACCAGACGATATTAACTTAAAGACCTTGTTAACTCGTCTAATGGAAA
ATGAAGTGACAGAAGTCATTGTAGCGACAAATGCAACAGCAGATGGTGAAGCGACATCCATGTACATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA96ZYK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495