Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   NQZ90_RS02020 Genome accession   NZ_CP102148
Coordinates   408826..409467 (+) Length   213 a.a.
NCBI ID   WP_002937025.1    Uniprot ID   A0A0H3MTV8
Organism   Streptococcus suis strain DNC15     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 403826..414467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS02000 (NQZ90_02000) - 404126..404863 (+) 738 WP_004194145.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  NQZ90_RS02005 (NQZ90_02005) stkP 404863..406857 (+) 1995 WP_141591425.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  NQZ90_RS02010 (NQZ90_02010) liaF 407146..407841 (+) 696 WP_024384079.1 cell wall-active antibiotics response protein LiaF -
  NQZ90_RS02015 (NQZ90_02015) - 407838..408854 (+) 1017 WP_002937028.1 sensor histidine kinase -
  NQZ90_RS02020 (NQZ90_02020) vraR 408826..409467 (+) 642 WP_002937025.1 response regulator transcription factor Regulator
  NQZ90_RS02025 (NQZ90_02025) - 409517..410917 (+) 1401 WP_029173958.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  NQZ90_RS02030 (NQZ90_02030) - 410919..411290 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  NQZ90_RS02035 (NQZ90_02035) cysK 411316..412242 (-) 927 WP_002937015.1 cysteine synthase A -
  NQZ90_RS02040 (NQZ90_02040) - 412332..412964 (-) 633 WP_015646510.1 YigZ family protein -
  NQZ90_RS02045 (NQZ90_02045) comFA/cflA 413021..414313 (+) 1293 WP_257110321.1 DEAD/DEAH box helicase Machinery gene

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23790.36 Da        Isoelectric Point: 4.8970

>NTDB_id=615559 NQZ90_RS02020 WP_002937025.1 408826..409467(+) (vraR) [Streptococcus suis strain DNC15]
MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVVVMDLVMPKMTGVEATLALLKEWPQAQI
VILTSYLDNEKIYPVLEAGARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLA
KGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVAQEDQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=615559 NQZ90_RS02020 WP_002937025.1 408826..409467(+) (vraR) [Streptococcus suis strain DNC15]
ATGAATACGATTCGAGTGATGCTGGTTGACGACCATGAGATGGTTCGTCTAGGATTGAAAAGTTACTTAAATTTACAGCC
AGATGTTGAAGTAGTTGCAGAAGCTAGTGATGGCGAGGAAGGTTTGGCTAAAGCATTAGAGGTTAAACCCGATGTTGTAG
TGATGGACTTGGTTATGCCCAAGATGACTGGCGTAGAAGCAACCCTGGCCTTGCTGAAGGAGTGGCCGCAAGCGCAGATT
GTTATCCTGACCTCCTACCTAGATAATGAAAAAATCTATCCTGTGCTGGAAGCAGGAGCTCGTGGCTATATGTTGAAAAC
GTCAAGTGCTGACGAAATCTTAGCAGCCATCCGCAAGGTAGCTCTTGGAGAATATGCTATTGAGACAGAAGTAGAGAAAA
AAGTAGAGCACCATAAACGCCACCCAGATTTACATGATGACTTGACAGCTCGTGAACGCGAAATCTTGACGCTGTTAGCC
AAGGGATATGATAATCAACGAATTGCAGATGAGTCATTCATATCCTTAAAAACTGTTAAAACCCATGTTTCCAATATCTT
ATCCAAACTAGCTGTGAGCGACCGTACTCAAGCAGTTGTTTATGCTTTCCAGCATGGTTTGGTGGCGCAAGAGGACCAAT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MTV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

54.589

97.183

0.531
  degU Bacillus subtilis subsp. subtilis str. 168

38.938

100

0.413