Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NQZ91_RS00665 Genome accession   NZ_CP102145
Coordinates   134191..134787 (+) Length   198 a.a.
NCBI ID   WP_105128095.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 129191..139787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS00650 (NQZ91_00650) micB 129611..130960 (+) 1350 WP_105122702.1 cell wall metabolism sensor histidine kinase VicK Regulator
  NQZ91_RS00655 (NQZ91_00655) vicX 130966..131769 (+) 804 WP_257117614.1 MBL fold metallo-hydrolase Regulator
  NQZ91_RS00660 (NQZ91_00660) pbp2b 132095..134182 (+) 2088 WP_398599413.1 penicillin-binding protein PBP2B -
  NQZ91_RS00665 (NQZ91_00665) recR 134191..134787 (+) 597 WP_105128095.1 recombination mediator RecR Machinery gene
  NQZ91_RS00670 (NQZ91_00670) - 134869..135915 (+) 1047 WP_257104594.1 D-alanine--D-alanine ligase -
  NQZ91_RS00675 (NQZ91_00675) - 136008..136388 (+) 381 WP_174852642.1 OsmC family protein -
  NQZ91_RS00680 (NQZ91_00680) - 136391..137464 (+) 1074 WP_105137014.1 ABC transporter permease -
  NQZ91_RS00685 (NQZ91_00685) - 137474..138142 (+) 669 WP_105122708.1 ABC transporter ATP-binding protein -
  NQZ91_RS00690 (NQZ91_00690) murF 138361..139722 (+) 1362 WP_257117617.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21721.85 Da        Isoelectric Point: 4.4829

>NTDB_id=615437 NQZ91_RS00665 WP_105128095.1 134191..134787(+) (recR) [Streptococcus suis strain DNS20]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSICGNLTDQDPCGICQDTSRDQT
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=615437 NQZ91_RS00665 WP_105128095.1 134191..134787(+) (recR) [Streptococcus suis strain DNS20]
ATGCTCTACCCAACTCCCATAGCTAAATTGATTGACAGTTATTCAAAATTACCTGGTATTGGTATTAAAACGGCAACACG
TTTAGCTTTCTATACCATCGGTATGGAAGATGATGTAGTCAACGAATTTGCTAAAAATCTCTTGGCAGCCAAGAGGGATT
TGACCTATTGTTCCATTTGTGGCAACTTGACAGACCAGGACCCTTGTGGTATTTGTCAAGACACCAGTCGTGATCAGACC
ACCATTTTAATAGTCGAGGATAGTCGAGATGTGACAGCCTTGGAAAATATTCAAGAATATCACGGCCTTTACCATGTCTT
GCACGGCTTGATTTCCCCGATGAATGGCATTGGACCAGACGATATTAACTTAAAGACCTTGCTAACTCGTTTGATGGAAA
ATGAAGTGACAGAAGTCATTGTAGCGACAAATGCAACAGCAGATGGTGAAGCGACATCCATGTACATCTCACGTGTCCTA
AAGCCAGCAGGTATCAAGGTTACTCGCCTGGCAAGAGGATTGGCAGTCGGAAGTGACATTGAATACGCAGATGAAGTCAC
CCTCCTTCGTGCCATTGAGAATAGGACAGAATTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495