Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SII_RS07530 Genome accession   NC_022237
Coordinates   1547086..1548846 (-) Length   586 a.a.
NCBI ID   WP_020999088.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1542086..1553846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS07510 (SII_1479) - 1542872..1543597 (-) 726 WP_003076141.1 GntR family transcriptional regulator -
  SII_RS07515 (SII_1480) celB 1543631..1544899 (-) 1269 WP_020999086.1 PTS cellobiose transporter subunit IIC -
  SII_RS07520 (SII_1481) - 1545042..1546439 (+) 1398 WP_020999087.1 glycoside hydrolase family 1 protein -
  SII_RS07525 (SII_1482) - 1546588..1547001 (-) 414 WP_003075980.1 cupin domain-containing protein -
  SII_RS07530 (SII_1483) rcrQ 1547086..1548846 (-) 1761 WP_020999088.1 ABC transporter ATP-binding protein Regulator
  SII_RS07535 (SII_1484) rcrP 1548836..1550602 (-) 1767 WP_020999089.1 ABC transporter ATP-binding protein Regulator
  SII_RS07540 (SII_1485) - 1550595..1551053 (-) 459 WP_020999090.1 MarR family winged helix-turn-helix transcriptional regulator -
  SII_RS07545 (SII_1486) - 1551225..1552412 (-) 1188 WP_020999091.1 NADH-dependent flavin oxidoreductase -
  SII_RS07550 (SII_1487) - 1552679..1553089 (-) 411 WP_020999092.1 peptide deformylase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65230.42 Da        Isoelectric Point: 6.5145

>NTDB_id=61543 SII_RS07530 WP_020999088.1 1547086..1548846(-) (rcrQ) [Streptococcus intermedius C270]
MENKKSSLFSQVKPYIKGFQFPLLVAFVGVILSSVITVYGPVKLKEITNLITEGMRSRIDLKAISNIALFLAVLYAVGTV
LNYMQSFIISSVVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNATEESKKAFQMLNTKLYNS
MWKSQFISGIMMPLMIFTGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKSQQLTTLKGDVTFDNVFFGYNPDRTIIHDFSAKAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGVDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAATKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDQLMEENGFYADLYNSQFDEEAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=61543 SII_RS07530 WP_020999088.1 1547086..1548846(-) (rcrQ) [Streptococcus intermedius C270]
ATGGAAAATAAAAAATCATCTTTATTTAGCCAAGTGAAACCCTATATCAAAGGATTCCAGTTTCCATTGCTCGTTGCGTT
TGTGGGAGTAATACTATCTAGTGTTATCACGGTTTATGGTCCGGTCAAATTAAAAGAAATTACCAATCTTATCACAGAAG
GAATGAGAAGTCGAATTGATCTGAAGGCAATCTCTAATATTGCTCTTTTCTTAGCCGTTTTATATGCGGTGGGTACTGTA
TTAAATTATATGCAATCCTTTATTATTTCGTCCGTCGTTCAGCATTTTTCAAAACGTTTACGGACAGCCATTGCGGAGAA
AATTAATAAATTACCCTTGCGGTATTTTGATAGTCATTCGCAAGGGGACACTCTTTCACGAGTCACTAATGACGTGGATA
CTGTTGGACAATCTCTGAACCAAAGTTTAGGAACAGTGATTTCATCAAGTTTGCTTCTCATTGCTGTTCTCTTTATGATG
TTTTATAACAACGTGGTTCTATCCTTTGTAACGATTGGATCGGTTTTGATTGGTTTTGTCTTTGTTGCGTTGATTATGGG
CAAATCACAACGGTTTTTCCGTGCACAACAAGAGAATCTTGCTAGTGTCAATGGATATGTGGAAGAGATGTATTCTGGTC
ACAATGTCATTGTCAGCTACAATGCTACCGAGGAATCAAAAAAAGCCTTTCAAATGCTTAATACGAAGCTTTATAATAGT
ATGTGGAAGTCCCAATTTATTTCTGGGATTATGATGCCGTTAATGATATTTACAGGGAACTTCGGTTATGTTATGGTCGT
ATTGGTTGGAGCGAGCATGGCATTGAATGGTGATGTCACGATGGGGACGATTGTTGCCTTTATGGTATATGTACGGACTT
TTTCTCAACCATTGTCCCAAATTGCACAAGGGATTACCACTCTTCAACAAGCTAGTGCTGCTATGGGGCGTGTATTTGAG
TTTTTAGCAGAGCCGGAAATGGAAAACGATGAGCACAAGTCTCAACAGCTCACAACTTTAAAGGGTGATGTTACCTTTGA
TAATGTATTCTTTGGCTACAATCCGGATCGAACAATTATTCATGATTTTTCTGCCAAGGCAAAAGCCGGCCAAAAGATTG
CTATTGTTGGTCCGACTGGTGCTGGAAAAACGACGATTGTCAATCTGTTGATGAAATTTTATGAAATTGAGAAAGGGCGG
ATTACCATTGATGGTGTTGATACCAAGCAGATGAAACGTTCTGAAGTGCATGATGCTTTCTCAATGGTCCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAAGAAAATTTGATTTACAATCAGAAGAATATTTCTGATGAAGCGGTTGTGGCAGCGA
CTAAAGCTGTCGGGGTTCATCACTTTATCAAGACTTTGCCAAAAGGATACGATACAGTGTTGGATGACACAGTCAGTCTT
TCTGTTGGGCAAAAGCAATTGCTAACTATCGCGCGTGCACTTCTTAAAGATGCTCCCTTACTTATCTTGGATGAAGCGAC
TTCGTCTGTTGATACGCGGACAGAAGAATTGATCCAAAAAGCGATGGATAAGTTGATGGAGGGAAGGACTTCTTTCGTCA
TTGCTCACCGCTTGTCGACCATTCGTAATGCTGATTTGATTTTGGTCATGCGTGATGGTAATATCATTGAACAAGGAAAT
CACGATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGAGGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.649

99.317

0.712

Multiple sequence alignment