Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SII_RS07535 Genome accession   NC_022237
Coordinates   1548836..1550602 (-) Length   588 a.a.
NCBI ID   WP_020999089.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1543836..1555602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS07520 (SII_1481) - 1545042..1546439 (+) 1398 WP_020999087.1 glycoside hydrolase family 1 protein -
  SII_RS07525 (SII_1482) - 1546588..1547001 (-) 414 WP_003075980.1 cupin domain-containing protein -
  SII_RS07530 (SII_1483) rcrQ 1547086..1548846 (-) 1761 WP_020999088.1 ABC transporter ATP-binding protein Regulator
  SII_RS07535 (SII_1484) rcrP 1548836..1550602 (-) 1767 WP_020999089.1 ABC transporter ATP-binding protein Regulator
  SII_RS07540 (SII_1485) - 1550595..1551053 (-) 459 WP_020999090.1 MarR family winged helix-turn-helix transcriptional regulator -
  SII_RS07545 (SII_1486) - 1551225..1552412 (-) 1188 WP_020999091.1 NADH-dependent flavin oxidoreductase -
  SII_RS07550 (SII_1487) - 1552679..1553089 (-) 411 WP_020999092.1 peptide deformylase -
  SII_RS07555 (SII_1488) scrK 1553155..1554054 (-) 900 WP_003074417.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65307.11 Da        Isoelectric Point: 6.9918

>NTDB_id=61544 SII_RS07535 WP_020999089.1 1548836..1550602(-) (rcrP) [Streptococcus intermedius C270]
MVKLFKRLTVKEVGMIIISILFTCLAVYLDLEVPTYISKITELLQTKGTVVSDLWNPGLKMIGLSFASFLSAVVVGFIAA
RLAASFTTSLRSDIFNRVLDYSNAEIKRFSIPSLLTRTTNDLTQIQLMITMGLQVVTRGPIMAIWAITKIIGKSEYWLWA
VIVAVIVNMIMTTVLMTLAFPKQSVIQRLTDKLNSITRESLTGLRVVRAYNAEDYQDDKFAGANDEVTRLNLFVNRLMAI
LNPIMMGISSGLTLAIYWIGAYLIQDAALSERLPIFSDMVVFMSYAMQVVMGFMLMAALFIVLPRTLVSAGRINEVLDLH
STIESPMQAKTAKDIKGEVVFDNVSFRYTKNSEAVIEHVSFTAKVGETVAFIGSTGSGKSTLISLIPRFYDVTEGRILVD
GVNVKDYQLEDLHNKIGYIPQKAVLFSGDIKSNLDFGQSNESPLDDEKMWSALDLAQAKSFVEEKEGGLHSEVAQSGTNF
SGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELAKKVKATTRLIVAQRISTIMDADQILVLDKGKVVGQGT
HKELLATNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=61544 SII_RS07535 WP_020999089.1 1548836..1550602(-) (rcrP) [Streptococcus intermedius C270]
ATGGTTAAATTGTTTAAACGTTTAACTGTTAAAGAAGTAGGGATGATTATCATCAGTATCTTGTTTACTTGTTTGGCAGT
TTACTTGGACTTAGAGGTTCCAACCTATATTTCAAAAATTACGGAACTCCTACAGACGAAAGGAACGGTCGTTTCTGATT
TGTGGAATCCGGGCTTGAAAATGATTGGATTGTCATTTGCTAGTTTTCTCAGTGCTGTGGTAGTTGGTTTTATTGCGGCT
AGATTGGCAGCTAGCTTTACAACGAGCTTGCGCTCAGATATTTTCAATCGTGTACTGGATTATTCAAATGCTGAGATTAA
GAGATTTTCTATTCCAAGTCTTTTAACGCGGACAACCAATGATCTTACGCAAATTCAGCTTATGATTACTATGGGCTTGC
AAGTCGTGACCCGTGGGCCGATTATGGCGATTTGGGCGATTACAAAAATCATTGGAAAATCAGAATACTGGCTATGGGCA
GTTATTGTCGCAGTTATTGTGAATATGATCATGACGACAGTTTTGATGACGTTGGCCTTTCCAAAGCAATCTGTTATTCA
ACGATTGACTGATAAGTTAAATAGTATTACGCGTGAAAGTCTAACAGGGCTTCGTGTTGTTCGGGCTTACAATGCTGAAG
ACTATCAAGATGATAAATTTGCAGGGGCAAATGATGAAGTGACTCGGTTGAATCTCTTTGTTAATCGGCTTATGGCGATT
TTAAATCCGATTATGATGGGGATTTCGAGTGGTTTGACCTTGGCAATATATTGGATTGGTGCTTACTTGATTCAAGATGC
AGCTTTATCAGAACGCTTGCCAATCTTTAGCGACATGGTTGTCTTTATGTCCTATGCTATGCAGGTCGTAATGGGCTTCA
TGCTCATGGCAGCTCTGTTTATCGTTCTTCCTCGTACCTTGGTGTCTGCGGGGCGGATTAATGAGGTACTTGATTTGCAT
TCAACGATTGAATCTCCAATGCAAGCAAAAACAGCTAAAGATATCAAAGGTGAAGTGGTATTTGACAATGTTTCTTTCCG
CTATACTAAAAACTCTGAGGCAGTTATTGAACATGTTAGCTTTACAGCTAAAGTGGGCGAAACAGTAGCTTTCATCGGAT
CAACTGGTTCTGGGAAATCAACCCTAATTAGTTTAATTCCTCGTTTCTATGATGTGACAGAAGGAAGAATTTTAGTAGAT
GGCGTGAATGTAAAAGATTATCAGTTGGAAGATTTGCATAATAAAATTGGCTACATTCCACAAAAAGCTGTTCTCTTTTC
TGGTGATATAAAGAGTAATTTAGATTTTGGACAAAGCAATGAAAGTCCATTGGATGATGAAAAAATGTGGTCTGCGTTGG
ACTTGGCACAAGCGAAATCATTTGTTGAAGAAAAAGAAGGTGGTCTGCACTCAGAGGTCGCACAAAGCGGAACCAATTTC
TCTGGTGGTCAAAAGCAGCGGTTGGCGATTGCGCGTGCACTTGCTAGGAAACCTGAAATTCTGATTTTTGACGATTCATT
TTCAGCACTGGACTATAAGACAGACCGTATTTTGCGAGAAGAATTGGCGAAAAAAGTGAAAGCTACAACCAGATTGATTG
TAGCTCAGCGGATTTCAACGATCATGGATGCTGATCAGATCTTGGTGTTGGATAAAGGGAAGGTTGTTGGGCAAGGGACT
CACAAAGAGCTACTAGCGACCAACGAAGTTTATCAAGAAATTGCTTACTCACAATTATCAAAGGAGGAATTGGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-291)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

70.5

100

0.719

Multiple sequence alignment