Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   NQZ92_RS09540 Genome accession   NZ_CP102143
Coordinates   1882153..1883193 (-) Length   346 a.a.
NCBI ID   WP_013730555.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR43     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1877153..1888193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ92_RS11280 - 1877988..1878105 (-) 118 Protein_1830 translation initiation factor IF-2 N-terminal domain-containing protein -
  NQZ92_RS09510 (NQZ92_09510) - 1878123..1878431 (-) 309 WP_002942377.1 YlxQ-related RNA-binding protein -
  NQZ92_RS09515 (NQZ92_09515) rnpM 1878418..1878714 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  NQZ92_RS09520 (NQZ92_09520) nusA 1878731..1879873 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  NQZ92_RS09525 (NQZ92_09525) rimP 1879946..1880416 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  NQZ92_RS09530 (NQZ92_09530) trmB 1880674..1881312 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NQZ92_RS09535 (NQZ92_09535) ccrZ 1881309..1882103 (-) 795 WP_013730554.1 cell cycle regulator CcrZ -
  NQZ92_RS09540 (NQZ92_09540) pptB 1882153..1883193 (-) 1041 WP_013730555.1 ABC transporter permease Regulator
  NQZ92_RS09545 (NQZ92_09545) pptA 1883190..1883924 (-) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  NQZ92_RS09550 (NQZ92_09550) - 1883987..1884400 (+) 414 WP_002939203.1 HIT family protein -
  NQZ92_RS09555 (NQZ92_09555) - 1884402..1884704 (+) 303 WP_002939199.1 hypothetical protein -
  NQZ92_RS09560 (NQZ92_09560) - 1884813..1886006 (-) 1194 WP_002939198.1 LCP family protein -
  NQZ92_RS09565 (NQZ92_09565) - 1886003..1886530 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  NQZ92_RS09570 (NQZ92_09570) tsaE 1886523..1886963 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40172.54 Da        Isoelectric Point: 10.0123

>NTDB_id=615415 NQZ92_RS09540 WP_013730555.1 1882153..1883193(-) (pptB) [Streptococcus suis strain DNR43]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARCTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLLVELGFALLFSKENT
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=615415 NQZ92_RS09540 WP_013730555.1 1882153..1883193(-) (pptB) [Streptococcus suis strain DNR43]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATACCGTCAATTATTGTTGTCGTTCCCTGAGAATC
CGTTGCCGATTGTTTTTGTGGTTATTGCAATCAGTCTACTGGTACTAGTGTCCGGAAGAATTGCGACTTATCTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGATGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACGACGGT
TAAAGGAATCAGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTTGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTTCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTACTGGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATACG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(154-329)

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

45.739

100

0.465
  pptB Streptococcus thermophilus LMD-9

44.886

100

0.457