Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   NQZ93_RS03875 Genome accession   NZ_CP102141
Coordinates   798371..800155 (+) Length   594 a.a.
NCBI ID   WP_024381778.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 793371..805155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS03850 (NQZ93_03850) - 793870..794121 (+) 252 WP_002943658.1 phage holin -
  NQZ93_RS03855 (NQZ93_03855) ldcB 794471..795226 (+) 756 WP_024381776.1 LD-carboxypeptidase LdcB/DacB -
  NQZ93_RS03860 (NQZ93_03860) - 795315..795758 (+) 444 WP_002935466.1 VOC family protein -
  NQZ93_RS03865 (NQZ93_03865) - 795781..797391 (-) 1611 WP_024381777.1 hypothetical protein -
  NQZ93_RS03870 (NQZ93_03870) - 797388..798131 (-) 744 WP_011922278.1 ABC transporter ATP-binding protein -
  NQZ93_RS03875 (NQZ93_03875) uvrC 798371..800155 (+) 1785 WP_024381778.1 excinuclease ABC subunit UvrC Machinery gene
  NQZ93_RS03880 (NQZ93_03880) - 800212..800340 (+) 129 WP_002935474.1 DUF4044 domain-containing protein -
  NQZ93_RS03885 (NQZ93_03885) obgE 800545..801858 (+) 1314 WP_032510371.1 GTPase ObgE -
  NQZ93_RS03890 (NQZ93_03890) - 802232..802396 (+) 165 WP_024381780.1 hypothetical protein -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68279.53 Da        Isoelectric Point: 8.9360

>NTDB_id=615279 NQZ93_RS03875 WP_024381778.1 798371..800155(+) (uvrC) [Streptococcus suis strain DNR48]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVAEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLLITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGENLPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVIKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPMPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDDLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GKIQLASVQEIAEAGVPYKVAEKVKESLSSKDEI

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=615279 NQZ93_RS03875 WP_024381778.1 798371..800155(+) (uvrC) [Streptococcus suis strain DNR48]
ATGAACGATTTGATCAAGCATAAATTGGAGTTACTACCAGATAGCCCTGGCTGTTACCTCCATAAAAACAAGTACGGTAA
GATTATCTATGTGGGCAAGGCCAAAAACCTACGCAATCGGGTGCGGTCCTATTTTCGTGGTGCCCATGATACCAAGACAG
AGGCCTTAGTAGCTGAAATTGCCGATTTTGAATTTATCGTGACAGATTCCAATATCGAGGCACTCTTGTTGGAAATCAAT
CTGATTCAGGAGAACAAGCCTCGCTATAACATCATGCTCAAGGACGACAAGTCCTATCCTTTTATCAAGATTACCAAAGA
ACGTCACCCACGGCTGCTCATTACACGGCAGATTAAGAAGGATGGCGGTCAGTATTTTGGTCCCTATCCAGATGTGGGTG
CGGCCAACCAGACCCTCAAACTATTGGAGCGCCTCTATCCTTTCCGCAAGTGTAAATTGCCTGAGAACAAGTATTGTCTT
TATTATCATTTGGGGCAATGTTTGGCTCATGGGGAAAACCTGCCCAGTCTGTCTGACTATGACAAGATGGCCAAGGAAGT
GGCCCAGTTCTTGACGGGGCATGATGATAAGATTGTCAAGGAAGTTCAGGACAAGATGAAGGCGGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCGGAATATCGTGATGTCCTTCAATCCATTTCAACCCTACGGACCAAGCAACGTGTGATGGCTCAT
GACTTGCAAAACCGCGATGTCTTTGGCTACTATGTGGACAAGGGCTGGATGTGTGTACAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGGAATGTCAATCTTTTTCCATACTATAATGATGCGGACGAAGATTTTTTGACCTACATTGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCGTCGGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTGGATACCAAGGTCATCAAGCCTCAGCGTGGCGAGAAGAAGCAACTCATCAATTTGGCGACCAAGAATGCGCGTGTCAG
TCTGGAGCAGAAGTTTAATCTTTTGGAGAAAAATCTGGAGAAGACCTACGGTGCTGTGGAGAATATCGGTCAGCTTTTAG
GGATTCCGATGCCTGTGCGGATTGAGGCTTTCGATAACTCCAACATCATGGGTACCAGTCCTGTGTCGGCCATGGTGGTC
TTTGAAAATGGGGTGCCTAATAAAAAAGAATACCGCAAGTATAAGATTAAGACGGTGGAGGGGCCAGATGATTATGCCTC
TATGCGTGAAGTGCTGCAACGCCGTTATAGTCGGGTCTTGAGGGACGATTTGACACCTCCTGATTTGATTATCATTGACG
GCGGTCAGGGACAGGTCAATGTCGCAAAACAGGTCATCGAGCAGGAGTTGGGCATGTCCATTCCCATTGCAGGTTTGCAG
AAGAATGACAAGCACCAGACCCATGAATTGCTCTTTGGCAATCCGTTGGAAGTGGTGGAATTGCCCCGTAATTCTCAGGA
ATTTTTCCTTCTGCATCGGATTCAAGATGAGGTTCACCGCTTTGCTATTGAGTTTCATCGTCAGGTTCGGTCAAAAAATT
CCTTCTCATCTAAATTGGACGGCATAGAAGGCTTGGGACCAAAACGAAAGCAGGCATTGATGAAACACTTCAAATCAATT
GGAAAAATCCAATTGGCAAGTGTCCAAGAAATTGCAGAAGCAGGAGTGCCTTACAAGGTGGCGGAAAAGGTCAAGGAAAG
CCTTTCTTCAAAGGATGAGATTTGA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

UvrB/uvrC motif (UVR)

(196-229)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

77.066

99.832

0.769
  uvrC Streptococcus pneumoniae R6

76.728

99.832

0.766
  uvrC Streptococcus pneumoniae D39

76.728

99.832

0.766