Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   LIO32_RS01865 Genome accession   NZ_CP085087
Coordinates   371827..372516 (+) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA2     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 366827..377516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS01840 - 367156..368499 (+) 1344 WP_024380515.1 DEAD/DEAH box helicase -
  LIO32_RS01845 - 368517..368741 (+) 225 WP_002936682.1 DUF4059 family protein -
  LIO32_RS01850 trxB 368755..369672 (+) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  LIO32_RS01855 - 369682..370221 (+) 540 WP_024385904.1 DUF177 domain-containing protein -
  LIO32_RS01860 gndA 370318..371745 (+) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  LIO32_RS01865 covR 371827..372516 (+) 690 WP_012027645.1 DNA-binding response regulator Regulator
  LIO32_RS01870 - 372606..373736 (+) 1131 WP_012027644.1 AI-2E family transporter -
  LIO32_RS01875 nrdR 373808..374299 (+) 492 WP_002938341.1 transcriptional regulator NrdR -
  LIO32_RS01880 - 374286..375437 (+) 1152 WP_024386752.1 replication initiation/membrane attachment protein -
  LIO32_RS01885 dnaI 375437..376336 (+) 900 WP_002938337.1 primosomal protein DnaI -
  LIO32_RS01890 - 376333..377046 (+) 714 Protein_335 nitroreductase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=615264 LIO32_RS01865 WP_012027645.1 371827..372516(+) (covR) [Streptococcus suis strain Ssuis_MA2]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=615264 LIO32_RS01865 WP_012027645.1 371827..372516(+) (covR) [Streptococcus suis strain Ssuis_MA2]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACTGAAGTTAGTCAATATGGGGAGGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432