Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LIO32_RS00745 Genome accession   NZ_CP085087
Coordinates   117222..118175 (+) Length   317 a.a.
NCBI ID   WP_024406069.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112222..123175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS00705 - 112492..113435 (-) 944 Protein_106 S66 peptidase family protein -
  LIO32_RS00710 comYA 113521..114471 (+) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  LIO32_RS00715 comYB 114383..115420 (+) 1038 WP_256770774.1 competence type IV pilus assembly protein ComGB Machinery gene
  LIO32_RS00720 comYC 115422..115703 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  LIO32_RS00725 comGD 115684..116091 (+) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  LIO32_RS00730 comYE 116063..116356 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  LIO32_RS00735 comGF/cglF 116343..116777 (+) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  LIO32_RS00740 comGG 116755..117165 (+) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG -
  LIO32_RS00745 comYH 117222..118175 (+) 954 WP_024406069.1 class I SAM-dependent methyltransferase Machinery gene
  LIO32_RS00750 - 118225..119412 (+) 1188 WP_012775473.1 acetate kinase -
  LIO32_RS00755 - 119726..120277 (+) 552 WP_012775474.1 folate family ECF transporter S component -
  LIO32_RS00760 - 120333..121589 (+) 1257 WP_012775475.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LIO32_RS00765 pepA 121634..122695 (-) 1062 WP_012775476.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35746.90 Da        Isoelectric Point: 4.5177

>NTDB_id=615259 LIO32_RS00745 WP_024406069.1 117222..118175(+) (comYH) [Streptococcus suis strain Ssuis_MA2]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNATYVAGQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=615259 LIO32_RS00745 WP_024406069.1 117222..118175(+) (comYH) [Streptococcus suis strain Ssuis_MA2]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTACTTACGTAGCTGGTCAGCATGAGACGGATCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTCATCAAGGCCAATCAGACT
GAGCCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTATTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTCTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGTCCAAAGGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTGAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTGCAAA
GTCTTCAGGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

60.443

99.685

0.603
  comYH Streptococcus mutans UA159

60.127

99.685

0.599