Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SII_RS04620 Genome accession   NC_022237
Coordinates   924105..925337 (-) Length   410 a.a.
NCBI ID   WP_003072918.1    Uniprot ID   A0A1L7MUF6
Organism   Streptococcus intermedius C270     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 919105..930337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS04600 (SII_0906) - 919748..921484 (-) 1737 WP_020998709.1 ABC transporter ATP-binding protein -
  SII_RS04605 (SII_0907) - 921702..922499 (-) 798 WP_020998710.1 formate/nitrite transporter family protein -
  SII_RS04610 (SII_0908) - 922675..923382 (-) 708 WP_020998711.1 glucosaminidase domain-containing protein -
  SII_RS04615 (SII_0909) yihA 923505..924092 (-) 588 WP_003072916.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SII_RS04620 (SII_0910) clpX 924105..925337 (-) 1233 WP_003072918.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SII_RS10115 (SII_0911) - 925391..925564 (-) 174 WP_003024903.1 hypothetical protein -
  SII_RS04630 (SII_0912) - 925564..926076 (-) 513 WP_020998712.1 dihydrofolate reductase -
  SII_RS04640 (SII_0913) - 926361..927200 (-) 840 WP_003072923.1 thymidylate synthase -
  SII_RS04645 (SII_0914) - 927286..928503 (-) 1218 WP_020998713.1 chloride channel protein -
  SII_RS04650 (SII_0915) - 928519..928782 (-) 264 WP_003024913.1 chorismate mutase -
  SII_RS04655 (SII_0916) - 928821..929663 (-) 843 WP_020998714.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45705.19 Da        Isoelectric Point: 4.3968

>NTDB_id=61522 SII_RS04620 WP_003072918.1 924105..925337(-) (clpX) [Streptococcus intermedius C270]
MPTNRTSEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREEEDDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENSSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVEDLVR
ILREPKNALVKQYQTLLSYDDVTLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDIMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=61522 SII_RS04620 WP_003072918.1 924105..925337(-) (clpX) [Streptococcus intermedius C270]
ATGCCTACAAATCGTACGAGCGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGTCAAGAAGAAGTTCAAAAAATTAT
TGCAGGAAATAATGCATTTATTTGTAACGAATGTGTGGAATTAGCACAAGAAATTATTAGAGAAGAATTAGCAGAAGAAG
TCTTGGCAGACTTGTCGGAAGTACCAAAACCACAAGAATTGCTTAACATTTTAAATCACTATGTAATAGGGCAAGATCGT
GCAAAGCGAGCGCTGGCTGTTGCTGTATACAATCACTATAAACGTATCAATTTTCACGATAATCGTGAAGAAGAGGATGA
TGTCGAATTACAAAAATCCAATATTCTTATGATTGGTCCAACCGGTTCTGGTAAGACTTTTCTTGCTCAAACTTTAGCGA
AAAGTCTAAATGTTCCCTTTGCGATTGCAGATGCAACGGCTTTGACAGAAGCTGGATATGTCGGAGAAGATGTTGAAAAC
ATTCTCTTAAAACTCTTGCAAGCTGCAGATTTTAATATTGAGCGTGCAGAACGTGGCATTATCTATGTAGATGAGATTGA
CAAAATTGCAAAGAAAAGCGAAAATGTCTCTATTACTCGTGATGTGTCTGGTGAAGGCGTTCAGCAAGCTTTGCTTAAAA
TCATTGAAGGGACTGTAGCTAGTGTACCTCCTCAAGGCGGTCGCAAACATCCACAGCAAGAAATGATTCAAGTGGATACT
AAGAATATTCTTTTTATCGTTGGTGGTGCTTTTGACGGAATTGAAGAAATTGTCAAACAACGTCTAGGTGAAAAGATTAT
TGGTTTTGGTCAAAATAACAAAGCTATTGATGAAAATAGTTCTTATATGCAAGAAATTATTTCCGAAGATATTCAAAAAT
TTGGACTCATCCCCGAATTGATTGGTCGTTTACCAGTGTTTGCTGCGCTTGAGCCTTTGACAGTTGAGGATTTGGTACGA
ATTCTTCGTGAGCCAAAGAACGCCCTAGTAAAACAATATCAAACTCTCCTTTCTTATGATGATGTTACATTAGAGTTTGA
TGATGATGCCCTCCAAGAAATTGCCAATAAGGCCATTGAACGTAAGACAGGTGCTCGTGGATTGCGTTCAATTATTGAAG
AAACTATGATGGATATCATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAATTAGTGCGGATTACCAAGGAAGCAGTTGAT
GGAACAGATAAACCGATTTTAGAAACAGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L7MUF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.341

100

0.863
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.706

98.049

0.576

Multiple sequence alignment