Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LF296_RS01945 Genome accession   NZ_CP085083
Coordinates   412602..413285 (-) Length   227 a.a.
NCBI ID   WP_272655360.1    Uniprot ID   A0AAJ6P5H8
Organism   Acinetobacter vivianii strain KJ-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407602..418285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS01910 (LF296_01910) mlaE 408020..408799 (+) 780 WP_272655358.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LF296_RS01915 (LF296_01915) - 408799..409473 (+) 675 WP_047430477.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LF296_RS01920 (LF296_01920) - 409493..410125 (+) 633 WP_004775917.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  LF296_RS01925 (LF296_01925) - 410137..410424 (+) 288 WP_005259845.1 STAS domain-containing protein -
  LF296_RS01930 (LF296_01930) - 410469..411485 (-) 1017 WP_004775913.1 CorA family divalent cation transporter -
  LF296_RS01935 (LF296_01935) - 411658..412242 (+) 585 WP_004775911.1 TIGR00730 family Rossman fold protein -
  LF296_RS01940 (LF296_01940) - 412253..412648 (+) 396 WP_272655359.1 NUDIX hydrolase -
  LF296_RS01945 (LF296_01945) comF 412602..413285 (-) 684 WP_272655360.1 ComF family protein Machinery gene
  LF296_RS01950 (LF296_01950) recG 413278..415323 (-) 2046 WP_272655361.1 ATP-dependent DNA helicase RecG -
  LF296_RS01955 (LF296_01955) - 415342..416160 (+) 819 WP_272655362.1 NAD-dependent epimerase/dehydratase family protein -
  LF296_RS01960 (LF296_01960) - 416288..417268 (+) 981 WP_272655363.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26080.16 Da        Isoelectric Point: 8.1792

>NTDB_id=615107 LF296_RS01945 WP_272655360.1 412602..413285(-) (comF) [Acinetobacter vivianii strain KJ-1]
MFKLLGKSAQQLFDYFTPCSLCDIGMKRHFGVCQSCWQQLPWFKQSIERNQQQILVACHYQYPIDRIIQQFKYEQKLHHQ
RLLNGLLLQVKLPKVHAIVPMPISTDRLVERGFNQTLLLAQSLSQHLNIPVWQPVQRLAQHSQKGLSRLERLENIEQQFV
AVAPNQIRYHKVLIVDDVVTTGSSITALSQVLEQLGCQQVYSLCLAAAQDQEINSNHAADTTELQPL

Nucleotide


Download         Length: 684 bp        

>NTDB_id=615107 LF296_RS01945 WP_272655360.1 412602..413285(-) (comF) [Acinetobacter vivianii strain KJ-1]
ATGTTTAAATTACTTGGCAAATCTGCACAACAGCTATTTGATTATTTTACCCCGTGTAGCCTGTGTGATATTGGTATGAA
ACGGCATTTTGGCGTTTGTCAGAGTTGCTGGCAACAATTACCGTGGTTCAAACAAAGCATTGAACGGAATCAACAGCAAA
TTCTGGTGGCCTGCCATTATCAGTATCCGATTGACCGCATCATTCAACAGTTTAAATATGAACAGAAACTACACCATCAA
CGTTTATTGAATGGCCTGTTATTACAAGTCAAACTTCCAAAAGTTCATGCGATTGTTCCTATGCCCATTTCAACAGATCG
TCTGGTCGAGCGTGGTTTTAACCAGACACTTTTATTGGCACAATCTCTAAGTCAGCACTTAAATATCCCTGTCTGGCAGC
CAGTACAACGTTTGGCCCAACATTCTCAAAAAGGCTTATCCCGTCTGGAACGGCTAGAAAATATTGAACAGCAATTTGTT
GCTGTAGCACCAAACCAGATTCGTTATCACAAAGTTCTGATTGTTGATGATGTGGTCACAACAGGCAGTTCAATTACAGC
TTTATCACAAGTGCTTGAACAACTTGGCTGCCAACAGGTCTATAGTCTGTGTCTAGCCGCTGCACAGGATCAAGAGATTA
ATTCAAACCATGCTGCTGACACCACGGAATTACAACCTCTTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(157-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

66.346

91.63

0.608
  comF Acinetobacter baumannii D1279779

65.865

91.63

0.604