Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   NQZ97_RS09940 Genome accession   NZ_CP102136
Coordinates   2038875..2039915 (-) Length   346 a.a.
NCBI ID   WP_105130320.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 2033875..2044915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS09910 (NQZ97_09910) - 2034832..2035140 (-) 309 WP_029944200.1 YlxQ-related RNA-binding protein -
  NQZ97_RS09915 (NQZ97_09915) rnpM 2035127..2035423 (-) 297 WP_043025744.1 RNase P modulator RnpM -
  NQZ97_RS09920 (NQZ97_09920) nusA 2035440..2036594 (-) 1155 WP_043025746.1 transcription termination factor NusA -
  NQZ97_RS09925 (NQZ97_09925) rimP 2036668..2037138 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  NQZ97_RS09930 (NQZ97_09930) trmB 2037396..2038034 (-) 639 WP_105130321.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NQZ97_RS09935 (NQZ97_09935) ccrZ 2038031..2038825 (-) 795 WP_099833054.1 cell cycle regulator CcrZ -
  NQZ97_RS09940 (NQZ97_09940) pptB 2038875..2039915 (-) 1041 WP_105130320.1 ABC transporter permease Regulator
  NQZ97_RS09945 (NQZ97_09945) pptA 2039912..2040646 (-) 735 WP_257110574.1 ABC transporter ATP-binding protein Regulator
  NQZ97_RS09950 (NQZ97_09950) - 2040709..2041122 (+) 414 WP_170238056.1 HIT family protein -
  NQZ97_RS09955 (NQZ97_09955) - 2041124..2041453 (+) 330 WP_170238055.1 chemotaxis protein -
  NQZ97_RS09960 (NQZ97_09960) - 2041811..2043004 (-) 1194 WP_024377877.1 LCP family protein -
  NQZ97_RS09965 (NQZ97_09965) - 2043001..2043528 (-) 528 WP_043025753.1 GNAT family N-acetyltransferase -
  NQZ97_RS09970 (NQZ97_09970) tsaE 2043521..2043961 (-) 441 WP_029177428.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 40153.49 Da        Isoelectric Point: 10.1278

>NTDB_id=614925 NQZ97_RS09940 WP_105130320.1 2038875..2039915(-) (pptB) [Streptococcus suis strain M105052_S26]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEE
ADQIFLLTKEKDILQGLEGAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYVTQLYPLEKDSKKIGLQNLLRVILYSLLLLELGFALLFSKENA
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=614925 NQZ97_RS09940 WP_105130320.1 2038875..2039915(-) (pptB) [Streptococcus suis strain M105052_S26]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTGCTAGGCTTTTTGAGTTTGCAATACCGTCAATTATTATTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTTGTGGTTATTGCAATCAGTCTACTGGTACTAGTGTCCGGAAGAATTGCGACTTATCTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGGTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACGACGGT
TAAAGGAATCAGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTTGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATGTAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATCGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTACTGCTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATGCG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

45.739

100

0.465

  pptB Streptococcus thermophilus LMD-9

45.17

100

0.46