Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NQZ97_RS03980 Genome accession   NZ_CP102136
Coordinates   790619..791215 (+) Length   198 a.a.
NCBI ID   WP_024386938.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 785619..796215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS03965 (NQZ97_03965) vicX 785730..786533 (+) 804 WP_004298858.1 MBL fold metallo-hydrolase Regulator
  NQZ97_RS03970 (NQZ97_03970) vga(F) 787061..788446 (+) 1386 WP_257110684.1 ABC-F type ribosomal protection protein Vga(F) -
  NQZ97_RS03975 (NQZ97_03975) pbp2b 788538..790610 (+) 2073 WP_257110685.1 penicillin-binding protein PBP2B -
  NQZ97_RS03980 (NQZ97_03980) recR 790619..791215 (+) 597 WP_024386938.1 recombination mediator RecR Machinery gene
  NQZ97_RS03985 (NQZ97_03985) - 791320..792366 (+) 1047 WP_170238276.1 D-alanine--D-alanine ligase -
  NQZ97_RS03990 (NQZ97_03990) - 792454..792834 (+) 381 WP_024401154.1 OsmC family protein -
  NQZ97_RS03995 (NQZ97_03995) - 792836..793912 (+) 1077 WP_257110686.1 ABC transporter permease -
  NQZ97_RS04000 (NQZ97_04000) - 793922..794590 (+) 669 WP_257110687.1 ABC transporter ATP-binding protein -
  NQZ97_RS04005 (NQZ97_04005) murF 794645..796006 (+) 1362 WP_257110688.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21679.77 Da        Isoelectric Point: 4.4757

>NTDB_id=614884 NQZ97_RS03980 WP_024386938.1 790619..791215(+) (recR) [Streptococcus suis strain M105052_S26]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSVCGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=614884 NQZ97_RS03980 WP_024386938.1 790619..791215(+) (recR) [Streptococcus suis strain M105052_S26]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAATTTGCTAAAAATTTATTGGCAGCTAAGCGAGACC
TATCTTATTGCTCCGTTTGTGGTAATCTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485