Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LG951_RS04105 Genome accession   NZ_CP085037
Coordinates   869109..869900 (+) Length   263 a.a.
NCBI ID   WP_106036218.1    Uniprot ID   -
Organism   Bacillus pumilus strain BIM B-171     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 864109..874900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS04070 (LG951_04070) - 864192..864740 (+) 549 WP_003217810.1 thioredoxin family protein -
  LG951_RS04075 (LG951_04075) - 865077..865544 (+) 468 WP_003217856.1 thiol-disulfide oxidoreductase DCC family protein -
  LG951_RS04080 (LG951_04080) - 865581..866837 (-) 1257 WP_050944748.1 transcriptional regulator -
  LG951_RS04085 (LG951_04085) - 867110..867697 (+) 588 WP_226804804.1 nitroreductase -
  LG951_RS04090 (LG951_04090) - 867738..867893 (-) 156 WP_065097458.1 YfhD family protein -
  LG951_RS04095 (LG951_04095) - 867955..868065 (-) 111 WP_017358836.1 YfhE family protein -
  LG951_RS04100 (LG951_04100) - 868118..869014 (-) 897 WP_003217821.1 TIGR01777 family oxidoreductase -
  LG951_RS04105 (LG951_04105) recX 869109..869900 (+) 792 WP_106036218.1 recombination regulator RecX Regulator
  LG951_RS04110 (LG951_04110) - 869904..870218 (+) 315 WP_226804805.1 YfhH family protein -
  LG951_RS04115 (LG951_04115) - 870241..870414 (-) 174 WP_003217811.1 YpzG family protein -
  LG951_RS04120 (LG951_04120) - 870440..870589 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  LG951_RS04125 (LG951_04125) - 870706..870978 (+) 273 WP_003217809.1 YfhJ family protein -
  LG951_RS04130 (LG951_04130) - 871268..872251 (+) 984 WP_003217835.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30588.04 Da        Isoelectric Point: 8.2178

>NTDB_id=614798 LG951_RS04105 WP_106036218.1 869109..869900(+) (recX) [Bacillus pumilus strain BIM B-171]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIDIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDNNIEQALSQYPDDLQLEE
AVKQVEKLVRKEKNRSAKEIEQRIKLQLQRKGFSFGIIDKALQEAYDGQEKEKEEEALLYMLEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=614798 LG951_RS04105 WP_106036218.1 869109..869900(+) (recX) [Bacillus pumilus strain BIM B-171]
ATGCCCTATATTACAAAAATCTCCGCTCAGAAAAACAATACAGAGCGGGTGAACATTTTTCTAGATGAAAAATACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATCGACATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTA
ACCGATTATTTGACGAAAAAAGAAATCCCGGCACCTGCTATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTCAGCACCCACCGTAAAACGAATAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGCTAAAGCTCAAAGGGATAGATGATAACAACATTGAACAAGCACTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCTGTGAAGCAGGTTGAGAAGCTTGTGAGAAAAGAAAAAAATCGTTCCGCAAAAGAGATCGAGCAGCGCATCAAGCTGCA
GCTGCAACGAAAAGGATTTTCGTTTGGGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAAAGGAAAAGG
AAGAAGAAGCCCTCCTCTATATGCTGGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAAAAGAAGATGAAA
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTCGACACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

62.357

100

0.624